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Table 3 Molecular markers showing association with traits evaluated using a mixed linear model (MLM)

From: Genome-wide association study of individual sugar content in fruit of Japanese pear (Pyrus spp.)

SNP Trait Chromosome Position (bp)  -log10 (p) value PVE (%)
Chr07_33139082 SUC 7 33139082 9.9 23.5
Chr15_17923340 SUC 15 17923340 4.4 6.0
Chr06_7938399 FRU 6 7938399 5.9 0.7
Chr07_33139082 FRU 7 33139082 6.6 9.2
Chr11_41197041 FRU 11 41197041 6.3 2.9
Chr15_16568005 FRU 15 16568005 5.7 1.7
Chr00_30710088 GLC 0 30710088 8.8 21.1
Chr06_7938399 GLC 6 7938399 4.6 2.3
Chr07_33139082 GLC 7 33139082 6.5 25.2
Chr11_41197041 GLC 11 41197041 18.9 21.7
Chr03_31587739 HarT 3 31587739 8.9 16.5
Chr15_16568005 HarT 15 16568005 12.2 20.3
Chr00_23086705 Aci 0 23086705 5.0 4.4
Chr06_20720912 Aci 6 20720912 15.7 13.1
Chr14_14932973 Aci 14 14932973 4.2 3.0
Chr16_3043313 Aci 16 3043313 7.6 11.0
  1. Traits are as defined in Table 2 
  2. PVE indicates the percentage of the phenotypic variance explained by the QTL
  3. SUC = sucrose content, FRU = fructose content, GLC = glucose content, HarT = harvest time,, Aci = acidity