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Table 1 Transcriptome sequencing data analysis

From: Transcriptome analysis of resistant and susceptible mulberry responses to Meloidogyne enterolobii infection

Sample

Raw reads, na

Clean reads, n (%)b

Q20 (99% base call accuracy), %c

Q30 (99.9% base call accuracy), %d

GC content, %e

KB0d-â‘ 

60,909,044

60,493,992 (99.32%)

98.2

94.71

46.43

KB0d-â‘¡

62,997,456

62,491,878 (99.2%)

98.68

96.05

45.91

KB0d-â‘¢

66,197,912

65,647,714 (99.17%)

98.5

95.33

46.73

GB0d-â‘ 

54,258,632

53,912,710 (99.36%)

98.31

94.91

46.89

GB0d-â‘¡

64,601,656

64,131,504 (99.27%)

98.78

96.17

46.9

GB0d-â‘¢

63,892,702

63,436,502 (99.29%)

98.83

96.35

47.0

KBjz8d-â‘ 

59,244,696

58,881,156 (99.39%)

98.33

94.97

47.05

KBjz8d-â‘¡

60,152,896

59,777,740 (99.38%)

98.22

94.69

47.23

KBjz8d-â‘¢

57,259,132

56,906,180 (99.38%)

98.31

94.91

47.33

KBck8d-â‘ 

60,755,908

60,391,936 (99.4%)

98.32

94.92

47.74

KBck8d-â‘¡

52,040,558

51,686,572 (99.32%)

98.26

94.81

47.29

KBck8d-â‘¢

64,174,538

63,719,678 (99.29%)

98.27

94.82

47.34

GBjz8d-â‘ 

68,430,676

67,917,050 (99.25%)

98.22

94.72

47.96

GBjz8d-â‘¡

63,719,816

63,292,076 (99.33%)

98.26

94.81

47.32

GBjz8d-â‘¢

61,292,316

60,748,664 (99.11%)

98.22

94.77

46.92

GBck8d-â‘ 

48,996,092

48,647,074 (99.29%)

98.28

94.88

47.62

GBck8d-â‘¡

85,457,146

84,877,082 (99.32%)

98.29

94.9

48.08

GBck8d-â‘¢

63,423,860

62,959,404 (99.27%)

98.16

94.6

46.78

KBjz17d-â‘ 

81,179,024

80,436,262 (99.09%)

98.2

94.69

47.1

KBjz17d-â‘¡

64,554,492

64,163,368 (99.39%)

98.33

94.93

47.82

KBjz17d-â‘¢

50,325,862

50,006,746 (99.37%)

98.32

94.91

47.69

KBck17d-â‘ 

57,315,338

56,890,984 (99.26%)

98.25

94.83

48.96

KBck17d-â‘¡

58,278,390

57,858,956 (99.28%)

98.32

95.01

49.78

KBck17d-â‘¢

60,404,646

59,916,916 (99.19%)

98.85

96.37

48.53

GBjz17d-â‘ 

60,396,566

59,987,776 (99.32%)

98.4

95.15

47.6

GBjz17d-â‘¡

73,025,484

72,582,168 (99.39%)

98.33

94.98

47.74

GBjz17d-â‘¢

72,193,056

71,733,542 (99.36%)

98.2

94.63

47.68

GBck17d-â‘ 

54,270,666

53,902,126 (99.32%)

98.44

95.29

46.68

GBck17d-â‘¡

64,310,188

63,735,094 (99.11%)

98.72

96.18

46.82

GBck17d-â‘¢

55,197,462

54,697,628 (99.09%)

98.69

96.14

47.8

KBjz23d-â‘ 

59,095,200

58,691,120 (99.32%)

98.31

94.93

47.14

KBjz23d-â‘¡

79,210,406

78,762,440 (99.43%)

98.33

94.96

47.72

KBjz23d-â‘¢

61,962,352

61,612,726 (99.44%)

98.41

95.16

47.66

KBck23d-â‘ 

57,595,244

57,045,606 (99.05%)

98.78

96.32

49.15

KBck23d-â‘¡

63,076,062

62,601,422 (99.25%)

98.77

96.3

47.09

KBck23d-â‘¢

63,769,422

63,342,658 (99.33%)

98.83

96.38

47.32

GBjz23d-â‘ 

64,686,018

64,110,442 (99.11%)

98.24

94.82

47.08

GBjz23d-â‘¡

69,797,772

69,378,514 (99.4%)

98.32

94.94

48.46

GBjz23d-â‘¢

47,339,138

47,004,460 (99.29%)

98.22

94.75

49.18

GBck23d-â‘ 

52,537,608

52,003,500 (98.98%)

98.72

96.21

49.64

GBck23d-â‘¡

60,610,656

60,072,490 (99.11%)

98.65

95.94

47.82

GBck23d-â‘¢

63,395,176

62,774,902 (99.02%)

98.71

96.13

48.32

  1. aNumber of original data reads
  2. bNumber of high-quality sequences (and percentage) of raw reads after filtering
  3. cPercentage of bases with an accuracy of ≥ 99% after filtering
  4. dPercentage of bases with an accuracy of ≥ 99.9% after filtering
  5. ePercentage of G/C nucleotides in the sequence