From: Exploiting natural variation in crown root traits via genome-wide association studies in maize
Env | Marker | Alleles | -log10(P) | R2 | Type | Mutation |
---|---|---|---|---|---|---|
2016SY | SNP-1563 | C/G | 2.94 | 0.035 | upstream | Â |
Mean | SNP-1300 | C/T | 4.14 | 0.050 | upstream | Â |
2017SY | SNP-1300 | C/T | 3.14 | 0.046 | upstream | Â |
2016SY | SNP-1300 | C/T | 2.89 | 0.034 | upstream | Â |
2016SY | SNP-1033 | A/G | 2.94 | 0.035 | upstream | Â |
Mean | InDel-481 | –––/CGCCTA | 3.76 | 0.045 | upstream |  |
2017SY | InDel-481 | –––/CGCCTA | 2.82 | 0.040 | upstream |  |
2016SY | InDel-481 | –––/CGCCTA | 2.98 | 0.035 | upstream |  |
Mean | SNP189 | C/T | 3.01 | 0.037 | exon | Stop gained |
2016SY | InDel651 | –––––––/AGACGGGGTCGCGG | 2.76 | 0.036 | exon | Frameshift |
Mean | InDel683 | ––––––/CCTCCTGGTCGC | 3.78 | 0.057 | exon | Insert four amino acids |
2016SY | InDel683 | ––––––/CCTCCTGGTCGC | 3.52 | 0.058 | exon | Insert four amino acids |
Mean | InDel1392 | T/- | 5.37 | 0.068 | downstream | Â |
2017SY | InDel1392 | T/- | 3.30 | 0.048 | downstream | Â |
2016SY | InDel1392 | T/- | 3.75 | 0.047 | downstream | Â |
Mean | InDel1427 | A/- | 5.42 | 0.068 | downstream | Â |
2017SY | InDel1427 | A/- | 4.05 | 0.062 | downstream | Â |
2016SY | InDel1427 | A/- | 5.17 | 0.068 | downstream | Â |
Mean | InDel1468 | A/- | 4.14 | 0.050 | downstream | Â |
2017SY | InDel1468 | A/- | 3.14 | 0.046 | downstream | Â |
2016SY | InDel1468 | A/- | 2.89 | 0.034 | downstream | Â |