Skip to main content

Table 4 Significant markers associated with crown root number by GRMZM2G141205 based association analysis

From: Exploiting natural variation in crown root traits via genome-wide association studies in maize

Env

Marker

Alleles

-log10(P)

R2

Type

Mutation

2016SY

SNP-1563

C/G

2.94

0.035

upstream

 

Mean

SNP-1300

C/T

4.14

0.050

upstream

 

2017SY

SNP-1300

C/T

3.14

0.046

upstream

 

2016SY

SNP-1300

C/T

2.89

0.034

upstream

 

2016SY

SNP-1033

A/G

2.94

0.035

upstream

 

Mean

InDel-481

–––/CGCCTA

3.76

0.045

upstream

 

2017SY

InDel-481

–––/CGCCTA

2.82

0.040

upstream

 

2016SY

InDel-481

–––/CGCCTA

2.98

0.035

upstream

 

Mean

SNP189

C/T

3.01

0.037

exon

Stop gained

2016SY

InDel651

–––––––/AGACGGGGTCGCGG

2.76

0.036

exon

Frameshift

Mean

InDel683

––––––/CCTCCTGGTCGC

3.78

0.057

exon

Insert four amino acids

2016SY

InDel683

––––––/CCTCCTGGTCGC

3.52

0.058

exon

Insert four amino acids

Mean

InDel1392

T/-

5.37

0.068

downstream

 

2017SY

InDel1392

T/-

3.30

0.048

downstream

 

2016SY

InDel1392

T/-

3.75

0.047

downstream

 

Mean

InDel1427

A/-

5.42

0.068

downstream

 

2017SY

InDel1427

A/-

4.05

0.062

downstream

 

2016SY

InDel1427

A/-

5.17

0.068

downstream

 

Mean

InDel1468

A/-

4.14

0.050

downstream

 

2017SY

InDel1468

A/-

3.14

0.046

downstream

 

2016SY

InDel1468

A/-

2.89

0.034

downstream

Â