Table 2 Summary of significant SNPs detected by different GWAS methods for crown root traits
From: Exploiting natural variation in crown root traits via genome-wide association studies in maize
Env | Trait | Single-locus methods | Multi-locus methods | |||
|---|---|---|---|---|---|---|
GLM | MLM | FASTmrMLM | FASTmrEMMA | FarmCPU | ||
2015SY | CRA | 6 | 0 | 6 | 1 | 1 |
CRD | 1 | 0 | 10 | 6 | 0 | |
CRN | 1 | 0 | 11 | 5 | 0 | |
2016SY | CRA | 55 | 2 | 21 | 6 | 6 |
CRD | 8 | 0 | 23 | 6 | 10 | |
CRN | 27 | 1 | 26 | 8 | 10 | |
2017SY | CRA | 0 | 0 | 13 | 3 | 0 |
CRD | 1 | 0 | 14 | 2 | 0 | |
CRN | 2 | 0 | 19 | 5 | 0 | |
BLUP | CRA | 40 | 0 | 18 | 7 | 0 |
CRD | 10 | 1 | 24 | 5 | 6 | |
CRN | 23 | 0 | 25 | 7 | 0 | |
Total | Â | 174 | 4 | 210 | 61 | 33 |