Table 3 High-density genetic map-assisted genome assembly
Index | Anchored | Oriented | Unplaced |
|---|---|---|---|
Unique mapped markers | 12,442 | 10,540 | 2,162 |
Markers per Mb | 10.3 | 10.9 | 3.2 |
Scaffolds | 1,643 | 1,044 | 783,254 |
Scaffolds with 1 anchored marker | 336 | 0 | 104 |
Scaffolds with 2 anchored markers | 111 | 77 | 187 |
Scaffolds with 3 anchored markers | 167 | 110 | 70 |
Scaffolds with ≥ 4 anchored markers | 1,029 | 857 | 181 |
Total bases (bp) | 1,208,281,949 | 963,551,338 | 670,115,130 |
Mapping rate (%) | 64.3 | 51.3 | 35.7 |