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Table 3 Significantly enriched GO terms (p < 0.01) found in the set of 533 genes most differentiating gene expression in high nodulating varieties from low nodulating varieties following inoculation with rhizobia based on PLS-DA analysis

From: Chickpea shows genotype-specific nodulation responses across soil nitrogen environment and root disease resistance categories

GO ID Description P (Fisher)
Signalling
 GO:0023052 signaling 0.00028
 GO:0007264 small GTPase mediated signal transduction 2.90E-06
 GO:0007154 cell communication 0.00041
 GO:0035556 intracellular signal transduction 0.0004
 GO:0007165 signal transduction 0.00026
 GO:0051716 cellular response to stimulus 0.00164
 GO:0050794 regulation of cellular process 0.00616
 GO:0050789 regulation of biological process 0.00928
Cellular localization
 GO:0051649 establishment of localization in cell 4.60E-05
 GO:0034613 cellular protein localization 7.70E-05
 GO:0006913 nucleocytoplasmic transport 0.00211
 GO:0046907 intracellular transport 4.50E-05
 GO:0070727 cellular macromolecule localization 7.70E-05
 GO:0051169 nuclear transport 0.00211
 GO:0051641 cellular localization 4.90E-05
 GO:0033036 macromolecule localization 0.00087
 GO:0071702 organic substance transport 0.00246
 GO:0006886 intracellular protein transport 7.70E-05
 GO:0015031 protein transport 0.0005
 GO:0008104 protein localization 0.0005
 GO:0045184 establishment of protein localization 0.0005
N compound transport
 GO:0071705 nitrogen compound transport 0.00104
 GO:0015833 peptide transport 0.00031
 GO:0042886 amide transport 0.00031
Cellular Components
 GO:0006996 organelle organization 0.00017
 GO:0044085 cellular component biogenesis 0.00031
 GO:0016043 cellular component organization 0.00061
 GO:0071840 cellular component organization or biogenesis 0.00069
 GO:0022607 cellular component assembly 0.0002
Macromolecule assembly
 GO:0034622 cellular macromolecular complex assembly 2.20E-05
 GO:0065003 macromolecular complex assembly 2.70E-05
 GO:0006325 chromatin organization 0.0007
 GO:0043933 macromolecular complex subunit organization 6.40E-05
 GO:0071103 DNA conformation change 4.50E-05
 GO:0006323 DNA packaging 2.70E-05
 GO:0051276 chromosome organization 0.00025
 GO:0034728 nucleosome organization 0.00028
 GO:0006333 chromatin assembly or disassembly 0.00028
 GO:0006334 nucleosome assembly 0.00028
 GO:0065004 protein-DNA complex assembly 0.00028
 GO:0031497 chromatin assembly 0.00028
 GO:0071824 protein-DNA complex subunit organization 0.00028