Table 2 Eleven stable QTNs identified by multilocus GWAS methods in four environments and their BLUP values
SNP | Chr | Position (bp) | LOD score | r2 (%) | Repeatability across environments/methods | R/S allele | Comparative genomics analysis | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Environment | Methoda | Times | Linked genes/QTLsb | Annotation | Distance (kb) | ||||||
AX-110,404,341 | 2 A | 694,749,410 | 3.54–8.02 | 2.25–4.66 | 2017, 2019 | 3, 5, 6 | 6 | T/G | PmHNK54 | - | - |
AX-108,822,998 | 5 A | 5,704,663 | 3.21–6.43 | 1.13–3.68 | 2018–2020 | 3 ~ 5 | 5 | T/C | TraesCS5A01G007900.1 | Lipoxygenase | 745 |
AX-111,769,070 | 5 A | 502,896,109 | 3.11–4.40 | 1.58–2.19 | 2017, 2018 | 2, 3, 6 | 3 |  C/G | QPm.nuls-5 A | - | - |
AX-108,771,002 | 1B | 582,441,405 | 3.73–3.90 | 0-2.13 | 2018, 2019 | 1, 2 | 2 |  C/T | TraesCS1B01G604700LC.1 | NBS-LRR like | 145 |
AX-110,117,322 | 1B | 582,542,111 | 3.52–8.37 | 1.27–3.35 | 2017–2019 | 3 ~ 6 | 6 |  C/A | |||
AX-110,111,855 | 2B | 26,097,938 | 3.37–5.82 | 1.07–3.04 | 2017, 2018 | 2, 3, 5, 6 | 6 | G/A | Pm42 | - | - |
AX-109,052,670 | 3B | 730,604,593 | 3.22–20.18 | 0-12.98 | 2017–2020 | 1, 2, 4 ~ 6 | 12 | T/C | TraesCS3B01G483700.1 | NBS-LRR | 292 |
AX-111,134,486 | 3B | 738,687,251 | 4.12–4.70 | 1.64–1.99 | 2017, 2018 | 2, 3 | 2 |  C/T | PmHNK | - | - |
AX-110,494,139 | 5B | 27,356,806 | 3.28–3.84 | 0.39-2.00 | 2017, 2019 | 2, 4 | 3 | G/T | TraesCS5B01G027700.1 | NBS-LRR like | 477 |
TraesCS5B01G029100.1 | Serine/threonine-protein phosphatase | 473 | |||||||||
AX-109,883,927 | 6B | 159,311,957 | 4.04-6.00 | 1.42–2.81 | 2017–2019 | 4, 6 | 3 |  C/A | TraesCS6B01G156800.2 | Leucine-rich repeat receptor-like protein kinase family protein | 66 |
TraesCS6B01G157000.1 | Leucine-rich repeat receptor-like protein kinase family protein | 90 | |||||||||
TraesCS6B01G157700.1 | Pathogenesis-related thaumatin family protein | 640 | |||||||||
TraesCS6B01G157800.1 | Leucine-rich repeat receptor-like protein kinase family protein | 676 | |||||||||
AX-108,787,526 | 7B | 405,972,463 | 3.24–9.91 | 1.76–4.46 | 2018–2020 | 1, 4 ~ 6 | 6 | G/A | TraesCS7B01G395600LC.1 | NAC domain protein | 393 |
TraesCS7B01G395900LC.1 | Catalase-peroxidase | 86 | |||||||||