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Table 1 Summary of genome assembly, gene annotation, and BUSCO validation

From: Comparative analysis of de novo genomes reveals dynamic intra-species divergence of NLRs in pepper

  ECW SF CM334a Zunla-1b Chiltepinb
Number of scaffolds 44,107 44,731 37,989 967,017 1,973,483
Total length of scaffolds 2.88 Gb 2.88 Gb 3.03 Gb 3.35 Gb 3.48 Gb
N50 of scaffolds 385 kb 418 kb 2.5 Mb 1.23 Mb 446 kb
Number of contigs 83,882 87,732 337,328 1,102,606 2,109,725
Total length of contigs 2.84 Gb 2.84 Gb 2.96 Gb 3.21 Gb 3.30 Gb
N50 of contigs 114 kb 110 kb 30 kb 55 kb 52 kb
Number of genes 35,355 35,158 35,884 35,336 34,476
Average/total CDS length 1,113 bp / 39 Mb 1,174 bp / 41 Mb 1,091 bp / 39 Mb 1,020 bp / 36 Mb 1,006 bp / 35 Mb
Average exon/intron length 240 bp / 874 bp 242 bp / 793 bp 243 bp / 945 bp 239 bp / 716 bp 249 bp / 734 bp
Proportion of complete BUSCOs 91.2% 92.3% 88.8% 90.6% 84.6%
  1. a The genome and annotation described in Kim et al. [3, 6]
  2. b The genome and annotation described in Qin et al. [4]