Table 1 Summary of genome assembly, gene annotation, and BUSCO validation
From: Comparative analysis of de novo genomes reveals dynamic intra-species divergence of NLRs in pepper
| Â | ECW | SF | CM334a | Zunla-1b | Chiltepinb |
|---|---|---|---|---|---|
Number of scaffolds | 44,107 | 44,731 | 37,989 | 967,017 | 1,973,483 |
Total length of scaffolds | 2.88Â Gb | 2.88Â Gb | 3.03Â Gb | 3.35Â Gb | 3.48Â Gb |
N50 of scaffolds | 385Â kb | 418Â kb | 2.5Â Mb | 1.23Â Mb | 446Â kb |
Number of contigs | 83,882 | 87,732 | 337,328 | 1,102,606 | 2,109,725 |
Total length of contigs | 2.84Â Gb | 2.84Â Gb | 2.96Â Gb | 3.21Â Gb | 3.30Â Gb |
N50 of contigs | 114Â kb | 110Â kb | 30Â kb | 55Â kb | 52Â kb |
Number of genes | 35,355 | 35,158 | 35,884 | 35,336 | 34,476 |
Average/total CDS length | 1,113Â bp / 39Â Mb | 1,174Â bp / 41Â Mb | 1,091Â bp / 39Â Mb | 1,020Â bp / 36Â Mb | 1,006Â bp / 35Â Mb |
Average exon/intron length | 240Â bp / 874Â bp | 242Â bp / 793Â bp | 243Â bp / 945Â bp | 239Â bp / 716Â bp | 249Â bp / 734Â bp |
Proportion of complete BUSCOs | 91.2% | 92.3% | 88.8% | 90.6% | 84.6% |