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Table 4 Summary of SNP marker based genetic diversity and population structure analysis in sesame

From: Genome-wide association study and its applications in the non-model crop Sesamum indicum

Number of accessions Sources of accessions Number of effective SNPs SNPs detection approach Average marker density/SNP Average nucleotide diversity of the panel Genetic distance Average gene diversity Number of subgroups identified References
95 Mediterranean sesame core collection (21 geographical regions) 5,292 ddRAD 46SNP/kb NA 0.023 to 0.524 0.28   [119]
366 HSRC-HAAS 89,924 SLAF-seq 1SNP/2.6kb 1.1×10-3 0.01 to 0.42 0.17 3 [122]
705 China gene bank 254,781 Whole-genome sequencing 1SNP/50bp 2.4×10-4 0.02   2 [15]
29 China gene bank 127,347 Whole-genome sequencing NA 1.5 × 10-4 NA NA NA [14]