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Table 3 Marker parameters calculated for each SSR type based on 52 primer pairs

From: Transcriptomic resources for prairie grass (Bromus catharticus): expressed transcripts, tissue-specific genes, and identification and validation of EST-SSR markers

SSR type

NP

ANF

APF

PP (%)

PIC

Rp

MI

Repeat types

Di-

5

3.20

3.00

95.00%

0.153

0.58

0.45

Tri-

18

3.22

2.89

89.35%

0.225

1.06

0.64

Tetra-

29

3.17

2.90

92.41%

0.290

1.29

0.73

Number of repeats

10

1

5.00

5.00

100.00%

0.168

1.00

0.84

9

1

3.00

3.00

100.00%

0.192

0.67

0.58

8

2

3.00

2.50

87.50%

0.126

0.46

0.27

7

6

3.33

3.33

100.00%

0.238

1.29

0.86

6

15

3.27

2.87

87.22%

0.232

1.06

0.62

5

27

3.07

2.78

91.85%

0.285

1.23

0.69

Total

52

3.19

2.90

91.60%

0.254

1.14

0.67

  1. NP Number of primer pairs, ANF Average number of fragments, APF Average number of polymorphic fragments, PP Percent of polymorphic fragments, PIC Polymorphic information content, Rp Resolving power, MI Marker index