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Table 1 The members of PbrPUB gene family in Chinese white pear (Pyrus bretschneideri) genome

From: Genome-wide identification and functional analysis of U-box E3 ubiquitin ligases gene family related to drought stress response in Chinese white pear (Pyrus bretschneideri)

Gene ID Name Chromosome Localization Gene DNA (bp) CDS (bp) Protein Length (aa) Molecular Weight(kDa) Theoretical pI Putative Subcellular Localization
Start End
Pbr015706.1 PbrPUB1 Chr1 256,929 261,486 4558 2337 779 86.85 7.14 Nucleus
Pbr018393.1 PbrPUB2 Chr1 4,223,236 4,229,195 5960 3018 1006 111.54 5.31 Cytoplasm. Nucleus
Pbr010707.1 PbrPUB3 Chr1 4,989,120 4,992,958 3839 1881 627 68.67 5.52 Nucleus
Pbr009550.1 PbrPUB4 Chr1 7,179,899 7,181,971 2073 2073 691 75.68 7.42 Nucleus
Pbr001047.1 PbrPUB5 Chr2 11,921,509 11,926,006 4498 1794 598 65.12 7.87 Cytoplasm. Nucleus
Pbr025219.1 PbrPUB6 Chr2 12,726,277 12,735,326 9050 2496 832 90.62 5.48 Nucleus
Pbr032056.1 PbrPUB7 Chr2 15,355,717 15,361,035 5319 2268 756 84.21 6.51 Nucleus
Pbr041491.1 PbrPUB8 Chr2 18,417,877 18,422,209 4333 2271 757 84.62 6.89 Nucleus
Pbr022832.1 PbrPUB9 Chr3 1,830,500 1,832,044 1545 1341 447 49.96 6.65 Nucleus
Pbr013414.1 PbrPUB10 Chr3 20,415,253 20,417,829 2577 1890 630 68.32 7.89 Nucleus
Pbr028559.1 PbrPUB11 Chr4 334,757 337,647 2891 1416 472 51.45 6.78 Nucleus
Pbr010503.2 PbrPUB12 Chr5 2,805,518 2,807,272 1755 1248 416 44.82 7.71 Nucleus
Pbr031387.1 PbrPUB13 Chr5 19,974,875 19,977,231 2357 1371 457 50.70 8.17 Cytoplasm. Nucleus
Pbr031385.1 PbrPUB14 Chr5 19,988,832 19,991,731 2900 1047 349 39.33 5.33 Nucleus
Pbr026702.1 PbrPUB15 Chr5 20,027,000 20,030,429 3430 2355 785 85.43 7.31 Nucleus
Pbr000535.1 PbrPUB16 Chr5 24,705,275 24,708,248 2974 2154 718 78.13 6.45 Nucleus
Pbr000230.1 PbrPUB17 Chr5 26,978,015 26,979,592 1578 1146 382 41.72 7.52 Nucleus
Pbr028339.1 PbrPUB18 Chr6 2,556,224 2,557,558 1335 1335 445 49.74 6.2 Nucleus
Pbr015077.1 PbrPUB19 Chr6 20,252,411 20,257,233 4823 2439 813 88.94 5.35 Nucleus
Pbr031290.1 PbrPUB20 Chr7 9,488,534 9,495,611 7078 2679 893 99.85 6.24 Cell membrane. Nucleus
Pbr010929.1 PbrPUB21 Chr7 11,579,201 11,581,264 2064 2064 688 75.44 6.63 Nucleus
Pbr040085.1 PbrPUB22 Chr7 14,330,366 14,333,661 3296 3006 1002 110.91 5.08 Cytoplasm. Nucleus
Pbr016655.1 PbrPUB23 Chr9 2,939,065 2,940,405 1341 1341 447 50.23 7.72 Nucleus
Pbr006392.1 PbrPUB24 Chr9 17,767,680 17,773,728 6049 3063 1021 115.77 5.1 Chloroplast. Nucleus
Pbr016092.1 PbrPUB25 Chr10 3,280,331 3,283,357 3027 2154 718 78.38 6.45 Nucleus
Pbr014928.1 PbrPUB26 Chr10 12,833,713 12,836,171 2459 1371 457 50.67 8.17 Cytoplasm. Nucleus
Pbr024184.1 PbrPUB27 Chr10 13,098,222 13,100,641 2420 1371 457 50.61 8.34 Nucleus
Pbr029555.1 PbrPUB28 Chr11 14,720,560 14,721,798 1239 1239 413 46.46 8.22 Nucleus
Pbr029558.1 PbrPUB29 Chr11 14,803,257 14,804,501 1245 1245 415 46.08 8.55 Nucleus
Pbr023629.1 PbrPUB30 Chr12 1,386,012 1,387,978 1967 1410 470 51.42 6.73 Nucleus
Pbr024251.1 PbrPUB31 Chr12 13,342,776 13,343,999 1224 1224 408 45.13 6.29 Nucleus
Pbr035713.1 PbrPUB32 Chr12 14,483,315 14,484,986 1672 1221 407 45.13 8.55 Nucleus
Pbr001353.1 PbrPUB33 Chr12 18,453,593 18,457,109 3517 2385 795 88.75 6.44 Cell membrane. Nucleus
Pbr018623.1 PbrPUB34 Chr13 8,122,125 8,126,781 4657 3093 1031 114.59 6.87 Nucleus
Pbr034872.1 PbrPUB35 Chr13 14,992,569 14,994,626 2058 2058 686 74.46 8.83 Nucleus
Pbr010331.1 PbrPUB36 Chr14 1,982,945 1,984,165 1221 1221 407 45.01 8.41 Nucleus
Pbr010332.1 PbrPUB37 Chr14 2,000,839 2,002,376 1538 1212 404 45.81 7.86 Nucleus
Pbr038818.1 PbrPUB38 Chr14 16,851,458 16,852,792 1335 1335 445 49.83 6.76 Nucleus
Pbr019772.1 PbrPUB39 Chr15 7,027,972 7,030,827 2856 1362 454 48.79 7.32 Nucleus
Pbr015478.1 PbrPUB40 Chr15 15,983,582 15,990,594 7013 4104 1368 151.30 5.4 Nucleus
Pbr014329.2 PbrPUB41 Chr15 17,789,694 17,794,348 4655 2280 760 85.02 6.42 Nucleus
Pbr004693.1 PbrPUB42 Chr15 21,640,514 21,645,193 4680 2403 801 91.56 6.77 Nucleus
Pbr004694.1 PbrPUB43 Chr15 21,654,165 21,658,208 4044 2412 804 91.82 8.04 Nucleus
Pbr024318.1 PbrPUB44 Chr15 24,513,187 24,517,833 4647 1788 596 65.04 7.88 Cytoplasm. Nucleus
Pbr025038.1 PbrPUB45 Chr15 29,959,515 29,960,959 1445 1260 420 46.65 7.48 Nucleus
Pbr020827.1 PbrPUB46 Chr15 42,112,935 42,118,262 5328 1986 662 71.75 5.15 Nucleus
Pbr012148.1 PbrPUB47 Chr16 3,520,190 3,521,515 1326 1326 442 49.02 7.28 Nucleus
Pbr015195.1 PbrPUB48 Chr16 6,260,812 6,266,259 5448 2328 776 85.59 4.99 Nucleus
Pbr001186.1 PbrPUB49 Chr16 19,513,720 19,518,315 4596 2442 814 89.22 5.15 Nucleus
Pbr017987.1 PbrPUB50 Chr17 19,820,745 19,823,337 2593 1329 443 47.63 6.69 Nucleus
Pbr003423.1 PbrPUB51 scaffold1145.0 13,868 15,091 1224 1224 408 45.13 6.29 Nucleus
Pbr003424.1 PbrPUB52 scaffold1145.0 87,357 88,580 1224 1224 408 45.13 6.29 Nucleus
Pbr003570.1 PbrPUB53 scaffold1158.0 67,952 71,514 3563 3048 1016 112.40 5.26 Nucleus
Pbr007911.1 PbrPUB54 scaffold1459.0 15,991 18,530 2540 1590 530 58.02 7.48 Nucleus
Pbr012694.1 PbrPUB55 scaffold195.0 243,575 247,284 3710 2337 779 86.98 6.99 Cell membrane. Nucleus
Pbr026868.1 PbrPUB56 scaffold435.0.1 119,841 123,521 3681 2511 837 90.94 5.19 Nucleus
Pbr026878.1 PbrPUB57 scaffold435.0.1 363,440 367,075 3636 2511 837 90.94 5.19 Nucleus
Pbr028067.1 PbrPUB58 scaffold463.0 87,246 88,490 1245 1245 415 46.07 8.55 Nucleus
Pbr028068.1 PbrPUB59 scaffold463.0 211,688 212,932 1245 1245 415 46.07 8.55 Nucleus
Pbr028907.1 PbrPUB60 scaffold482.0 220,241 221,464 1224 1224 408 45.15 6.29 Nucleus
Pbr036646.1 PbrPUB61 scaffold727.0 14,450 19,726 5277 2019 673 72.93 5.39 Nucleus
Pbr036650.1 PbrPUB62 scaffold727.0 98,641 103,917 5277 2019 673 72.93 5.39 Nucleus