Table 1 The members of PbrPUB gene family in Chinese white pear (Pyrus bretschneideri) genome
Gene ID | Name | Chromosome | Localization | Gene DNA (bp) | CDS (bp) | Protein Length (aa) | Molecular Weight(kDa) | Theoretical pI | Putative Subcellular Localization | |
|---|---|---|---|---|---|---|---|---|---|---|
Start | End | |||||||||
Pbr015706.1 | PbrPUB1 | Chr1 | 256,929 | 261,486 | 4558 | 2337 | 779 | 86.85 | 7.14 | Nucleus |
Pbr018393.1 | PbrPUB2 | Chr1 | 4,223,236 | 4,229,195 | 5960 | 3018 | 1006 | 111.54 | 5.31 | Cytoplasm. Nucleus |
Pbr010707.1 | PbrPUB3 | Chr1 | 4,989,120 | 4,992,958 | 3839 | 1881 | 627 | 68.67 | 5.52 | Nucleus |
Pbr009550.1 | PbrPUB4 | Chr1 | 7,179,899 | 7,181,971 | 2073 | 2073 | 691 | 75.68 | 7.42 | Nucleus |
Pbr001047.1 | PbrPUB5 | Chr2 | 11,921,509 | 11,926,006 | 4498 | 1794 | 598 | 65.12 | 7.87 | Cytoplasm. Nucleus |
Pbr025219.1 | PbrPUB6 | Chr2 | 12,726,277 | 12,735,326 | 9050 | 2496 | 832 | 90.62 | 5.48 | Nucleus |
Pbr032056.1 | PbrPUB7 | Chr2 | 15,355,717 | 15,361,035 | 5319 | 2268 | 756 | 84.21 | 6.51 | Nucleus |
Pbr041491.1 | PbrPUB8 | Chr2 | 18,417,877 | 18,422,209 | 4333 | 2271 | 757 | 84.62 | 6.89 | Nucleus |
Pbr022832.1 | PbrPUB9 | Chr3 | 1,830,500 | 1,832,044 | 1545 | 1341 | 447 | 49.96 | 6.65 | Nucleus |
Pbr013414.1 | PbrPUB10 | Chr3 | 20,415,253 | 20,417,829 | 2577 | 1890 | 630 | 68.32 | 7.89 | Nucleus |
Pbr028559.1 | PbrPUB11 | Chr4 | 334,757 | 337,647 | 2891 | 1416 | 472 | 51.45 | 6.78 | Nucleus |
Pbr010503.2 | PbrPUB12 | Chr5 | 2,805,518 | 2,807,272 | 1755 | 1248 | 416 | 44.82 | 7.71 | Nucleus |
Pbr031387.1 | PbrPUB13 | Chr5 | 19,974,875 | 19,977,231 | 2357 | 1371 | 457 | 50.70 | 8.17 | Cytoplasm. Nucleus |
Pbr031385.1 | PbrPUB14 | Chr5 | 19,988,832 | 19,991,731 | 2900 | 1047 | 349 | 39.33 | 5.33 | Nucleus |
Pbr026702.1 | PbrPUB15 | Chr5 | 20,027,000 | 20,030,429 | 3430 | 2355 | 785 | 85.43 | 7.31 | Nucleus |
Pbr000535.1 | PbrPUB16 | Chr5 | 24,705,275 | 24,708,248 | 2974 | 2154 | 718 | 78.13 | 6.45 | Nucleus |
Pbr000230.1 | PbrPUB17 | Chr5 | 26,978,015 | 26,979,592 | 1578 | 1146 | 382 | 41.72 | 7.52 | Nucleus |
Pbr028339.1 | PbrPUB18 | Chr6 | 2,556,224 | 2,557,558 | 1335 | 1335 | 445 | 49.74 | 6.2 | Nucleus |
Pbr015077.1 | PbrPUB19 | Chr6 | 20,252,411 | 20,257,233 | 4823 | 2439 | 813 | 88.94 | 5.35 | Nucleus |
Pbr031290.1 | PbrPUB20 | Chr7 | 9,488,534 | 9,495,611 | 7078 | 2679 | 893 | 99.85 | 6.24 | Cell membrane. Nucleus |
Pbr010929.1 | PbrPUB21 | Chr7 | 11,579,201 | 11,581,264 | 2064 | 2064 | 688 | 75.44 | 6.63 | Nucleus |
Pbr040085.1 | PbrPUB22 | Chr7 | 14,330,366 | 14,333,661 | 3296 | 3006 | 1002 | 110.91 | 5.08 | Cytoplasm. Nucleus |
Pbr016655.1 | PbrPUB23 | Chr9 | 2,939,065 | 2,940,405 | 1341 | 1341 | 447 | 50.23 | 7.72 | Nucleus |
Pbr006392.1 | PbrPUB24 | Chr9 | 17,767,680 | 17,773,728 | 6049 | 3063 | 1021 | 115.77 | 5.1 | Chloroplast. Nucleus |
Pbr016092.1 | PbrPUB25 | Chr10 | 3,280,331 | 3,283,357 | 3027 | 2154 | 718 | 78.38 | 6.45 | Nucleus |
Pbr014928.1 | PbrPUB26 | Chr10 | 12,833,713 | 12,836,171 | 2459 | 1371 | 457 | 50.67 | 8.17 | Cytoplasm. Nucleus |
Pbr024184.1 | PbrPUB27 | Chr10 | 13,098,222 | 13,100,641 | 2420 | 1371 | 457 | 50.61 | 8.34 | Nucleus |
Pbr029555.1 | PbrPUB28 | Chr11 | 14,720,560 | 14,721,798 | 1239 | 1239 | 413 | 46.46 | 8.22 | Nucleus |
Pbr029558.1 | PbrPUB29 | Chr11 | 14,803,257 | 14,804,501 | 1245 | 1245 | 415 | 46.08 | 8.55 | Nucleus |
Pbr023629.1 | PbrPUB30 | Chr12 | 1,386,012 | 1,387,978 | 1967 | 1410 | 470 | 51.42 | 6.73 | Nucleus |
Pbr024251.1 | PbrPUB31 | Chr12 | 13,342,776 | 13,343,999 | 1224 | 1224 | 408 | 45.13 | 6.29 | Nucleus |
Pbr035713.1 | PbrPUB32 | Chr12 | 14,483,315 | 14,484,986 | 1672 | 1221 | 407 | 45.13 | 8.55 | Nucleus |
Pbr001353.1 | PbrPUB33 | Chr12 | 18,453,593 | 18,457,109 | 3517 | 2385 | 795 | 88.75 | 6.44 | Cell membrane. Nucleus |
Pbr018623.1 | PbrPUB34 | Chr13 | 8,122,125 | 8,126,781 | 4657 | 3093 | 1031 | 114.59 | 6.87 | Nucleus |
Pbr034872.1 | PbrPUB35 | Chr13 | 14,992,569 | 14,994,626 | 2058 | 2058 | 686 | 74.46 | 8.83 | Nucleus |
Pbr010331.1 | PbrPUB36 | Chr14 | 1,982,945 | 1,984,165 | 1221 | 1221 | 407 | 45.01 | 8.41 | Nucleus |
Pbr010332.1 | PbrPUB37 | Chr14 | 2,000,839 | 2,002,376 | 1538 | 1212 | 404 | 45.81 | 7.86 | Nucleus |
Pbr038818.1 | PbrPUB38 | Chr14 | 16,851,458 | 16,852,792 | 1335 | 1335 | 445 | 49.83 | 6.76 | Nucleus |
Pbr019772.1 | PbrPUB39 | Chr15 | 7,027,972 | 7,030,827 | 2856 | 1362 | 454 | 48.79 | 7.32 | Nucleus |
Pbr015478.1 | PbrPUB40 | Chr15 | 15,983,582 | 15,990,594 | 7013 | 4104 | 1368 | 151.30 | 5.4 | Nucleus |
Pbr014329.2 | PbrPUB41 | Chr15 | 17,789,694 | 17,794,348 | 4655 | 2280 | 760 | 85.02 | 6.42 | Nucleus |
Pbr004693.1 | PbrPUB42 | Chr15 | 21,640,514 | 21,645,193 | 4680 | 2403 | 801 | 91.56 | 6.77 | Nucleus |
Pbr004694.1 | PbrPUB43 | Chr15 | 21,654,165 | 21,658,208 | 4044 | 2412 | 804 | 91.82 | 8.04 | Nucleus |
Pbr024318.1 | PbrPUB44 | Chr15 | 24,513,187 | 24,517,833 | 4647 | 1788 | 596 | 65.04 | 7.88 | Cytoplasm. Nucleus |
Pbr025038.1 | PbrPUB45 | Chr15 | 29,959,515 | 29,960,959 | 1445 | 1260 | 420 | 46.65 | 7.48 | Nucleus |
Pbr020827.1 | PbrPUB46 | Chr15 | 42,112,935 | 42,118,262 | 5328 | 1986 | 662 | 71.75 | 5.15 | Nucleus |
Pbr012148.1 | PbrPUB47 | Chr16 | 3,520,190 | 3,521,515 | 1326 | 1326 | 442 | 49.02 | 7.28 | Nucleus |
Pbr015195.1 | PbrPUB48 | Chr16 | 6,260,812 | 6,266,259 | 5448 | 2328 | 776 | 85.59 | 4.99 | Nucleus |
Pbr001186.1 | PbrPUB49 | Chr16 | 19,513,720 | 19,518,315 | 4596 | 2442 | 814 | 89.22 | 5.15 | Nucleus |
Pbr017987.1 | PbrPUB50 | Chr17 | 19,820,745 | 19,823,337 | 2593 | 1329 | 443 | 47.63 | 6.69 | Nucleus |
Pbr003423.1 | PbrPUB51 | scaffold1145.0 | 13,868 | 15,091 | 1224 | 1224 | 408 | 45.13 | 6.29 | Nucleus |
Pbr003424.1 | PbrPUB52 | scaffold1145.0 | 87,357 | 88,580 | 1224 | 1224 | 408 | 45.13 | 6.29 | Nucleus |
Pbr003570.1 | PbrPUB53 | scaffold1158.0 | 67,952 | 71,514 | 3563 | 3048 | 1016 | 112.40 | 5.26 | Nucleus |
Pbr007911.1 | PbrPUB54 | scaffold1459.0 | 15,991 | 18,530 | 2540 | 1590 | 530 | 58.02 | 7.48 | Nucleus |
Pbr012694.1 | PbrPUB55 | scaffold195.0 | 243,575 | 247,284 | 3710 | 2337 | 779 | 86.98 | 6.99 | Cell membrane. Nucleus |
Pbr026868.1 | PbrPUB56 | scaffold435.0.1 | 119,841 | 123,521 | 3681 | 2511 | 837 | 90.94 | 5.19 | Nucleus |
Pbr026878.1 | PbrPUB57 | scaffold435.0.1 | 363,440 | 367,075 | 3636 | 2511 | 837 | 90.94 | 5.19 | Nucleus |
Pbr028067.1 | PbrPUB58 | scaffold463.0 | 87,246 | 88,490 | 1245 | 1245 | 415 | 46.07 | 8.55 | Nucleus |
Pbr028068.1 | PbrPUB59 | scaffold463.0 | 211,688 | 212,932 | 1245 | 1245 | 415 | 46.07 | 8.55 | Nucleus |
Pbr028907.1 | PbrPUB60 | scaffold482.0 | 220,241 | 221,464 | 1224 | 1224 | 408 | 45.15 | 6.29 | Nucleus |
Pbr036646.1 | PbrPUB61 | scaffold727.0 | 14,450 | 19,726 | 5277 | 2019 | 673 | 72.93 | 5.39 | Nucleus |
Pbr036650.1 | PbrPUB62 | scaffold727.0 | 98,641 | 103,917 | 5277 | 2019 | 673 | 72.93 | 5.39 | Nucleus |