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Table 3 Pairwise comparisons between phenotypes carrying different combination of allele (AA-BB) at qSmIA08 and qSmIA02/B02 SNP positions

From: Genetic mapping and QTL analysis for peanut smut resistance

Pairwise comparisona Differencesb Lower confidence interval Upper confidence interval P-valuec
qSmIA08 AA qSmIA02/B02 AA - qSmIA08 BB qSmIA02/B02 AA 0.09 −0.01 0.19 0.08
qSmIA08 AA qSmIA02/B02 AA - qSmIA08 AA qSmIA02/B02 BB 0.05 −0.04 0.14 0.51
qSmIA08 AA qSmIA02/B02 AA - qSmIA08 BB qSmIA02/B02 BB 0.19 0.11 0.28 0.00
qSmIA08 AA qSmIA02/B02 BB - qSmIA08 BB qSmIA02/B02 AA −0.04 −0.14 0.05 0.64
qSmIA08 BB qSmIA02/B02 AA - qSmIA08 BB qSmIA02/B02 BB 0.10 0.01 0.20 0.02
qSmIA08 AA qSmIA02/B02 BB - qSmIA08 BB qSmIA02/B02 BB 0.15 0.06 0.23 0.00
  1. Results of a Tukey HSD test after ANOVA = Mean Incidence ~ AX-147229403 + AX-147212854. cPairwise comparisons were performed for the means of smut incidence of 103 RILs at AX-147229403 and AX-147212854 SNP positions. bDifferences were computed between the maximum smut incidence of each group indicated by the QTL name and the genotype. cP-value of the Tukey HSD test (α = 0.05)