Gene | RNAseq counts (Reads Per Kilobase of exon per Million mapped sequence reads) | Effect of RNAi measured relative to null segregants ± SD | ||||||
---|---|---|---|---|---|---|---|---|
RNA expression | Primary lateral shoots | Secondary lateral shoots | ||||||
EA | VE | Control | Number | Weight | Number | Weight | ||
NtLs | 1.16 | 62.97 | 1.14 | 0.50 ± 0.08 | 1.00 ± 0.00 | 1.28 ± 0.15 | 0.13 ± 0.09a | 0.1 ± 0.06a |
NtBl1 | 12.80 | 108.85 | 8.43 | 0.31 ± 0.05 | 1.02 ± 0.06 | 1.21 ± 0.18 | 0.00 ± 0.00a | 0.00 ± 0.00a |
NtBl2 | ND | ND | ND | 0.19 ± 0.04 | 1.00 ± 0.00 | 1.13 ± 0.15 | 1.00 ± 0.10 | 1.46 ± 1.65 |
NtBl3 | 11.88 | 23.20 | 10.26 | 0.30 ± 0.09 | 1.00 ± 0.00 | 1.45 ± 0.48 | 0.88 ± 0.46 | 0.77 ± 0.12 |
NtREV | 110.74 | 167.99 | 305.61 | 0.62 ± 0.10 | 1.00 ± 0.00 | 0.98 ± 0.09 | 0.06 ± 0.10a | 0.03 ± 0.04a |
NtCUC1 | 4.24 | 10.32 | 8.38 | 0.16 ± 0.07 | 1.00 ± 0.00 | 1.05 ± 0.12 | 0.91 ± 0.18 | 0.57 ± 0.10 |
NtCUC2 | ND | ND | ND | 0.53 ± 0.04 | 1.00 ± 0.00 | 1,14 ± 0.26 | 0.97 ± 0.12 | 1.06 ± 0.4 |
NtCUC3 | ND | ND | ND | 0.17 ± 0.10 | 1.00 ± 0.00 | 0.96 ± 0.17 | 1.08 ± 0.01 | 0.71 ± 0.26 |
NtCUC4 | ND | ND | ND | 0.69 ± 0.03 | 1.00 ± 0.00 | 0.91 ± 0.04 | 1.05 ± 0.09 | 0.75 ± 0.19 |
NtFHY3 | 23.49 | 36.90 | 46.59 | 0.31 ± 0.17 | 1.00 ± 0.00 | 0.94 ± 0.08 | 1.03 ± 0.11 | 1.12 ± 0.62 |
NtLOM1 | 36.69 | 49.15 | 65.87 | 0.38 ± 0.06 | 1.00 ± 0.00 | 1.09 ± 0.15 | 1.72 ± 1.97 | 2.56 ± 3.99 |
NtLOF1 | 30.27 | 60.57 | 25.56 | 0.38 ± 0.11 | 1.01 ± 0.02 | 1.67 ± 0.15 | 0.28 ± 0.30 | 0.64 ± 0.58 |
EA1 | 32.93 | 2.30 | ND | 0.09 ± 0.03 | 1.00 ± 0.00 | 1.14 ± 0.16 | 0.97 ± 0.15 | 1.21 ± 0.34 |
EA2 | 20.13 | 9.70 | 1.48 | 0.28 ± 0.16 | 1.00 ± 0.00 | 1.17 ± 0.35 | 1.34 ± 0.82 | 1.65 ± 1.59 |
EA3 | 22.56 | 1.77 | ND | 0.16 ± 0.03 | 1.00 ± 0.00 | 0.93 ± 0.09 | 0.68 ± 0.16 | 1.42 ± 1.53 |
EA4 | 43.22 | 2.50 | 1.19 | 0.35 ± 0.17 | 1.00 ± 0.00 | 1.16 ± 0.28 | 1.14 ± 0.41 | 1.09 ± 0.38 |
EA5 | 14.41 | ND | ND | 0.10 ± 0.04 | 1.00 ± 0.00 | 1.04 ± 0.07 | 4.05 ± 2.21 | 18.88 ± 28.34 |
EA6 | 22.78 | ND | ND | 0.80 ± 0.22 | 1.00 ± 0.00 | 1.01 ± 0.26 | 1.04 ± 0.27 | 1.30 ± 0.80 |
EA7 | 12.14 | ND | ND | 0.10 ± 0.01 | 1.00 ± 0.00 | 1.02 ± 0.17 | 0.83 ± 0.76 | 0.77 ± 0.70 |
EA8 | 43.57 | ND | 1.47 | 0.02 ± 0.02 | 1.00 ± 0.00 | 1.08 ± 0.36 | 1.14 ± 0.11 | 1.21 ± 0.2 |
EA9 | 14.03 | ND | ND | 0.17 ± 0.12 | 1.00 ± 0.00 | 0.95 ± 0.17 | 1.10 ± 0.77 | 1.16 ± 0.74 |
EA10 | 51.93 | 8.72 | 1.25 | 0.43 ± 0.08 | 1.00 ± 0.00 | 1.33 ± 0.16 | 1.59 ± 0.99 | 0.96 ± 0.21 |
EA11 | 19.63 | 1.70 | 1.62 | 0.56 ± 0.08 | 1.00 ± 0.00 | 0.98 ± 0.27 | 0.98 ± 0.09 | 1.52 ± 0.92 |
VE1 | 39.71 | 49.37 | 3.79 | 0.58 ± 0.06 | 1.00 ± 0.00 | 0.99 ± 0.30 | 1.10 ± 0.16 | 1.27 ± 0.51 |
VE2 | 26.70 | 32.21 | 0.69 | 0.51 ± 0.02 | 1.00 ± 0.00 | 1.04 ± 0.12 | 1.09 ± 0.17 | 0.95 ± 0.54 |
VE3 | 6.51 | 49.14 | ND | 1.51 ± 0.05 | 1.00 ± 0.00 | 1.16 ± 0.21 | 1.02 ± 0.45 | 0.97 ± 0.35 |
VE4 | ND | 10.94 | ND | 0.32 ± 0.04 | 1.00 ± 0.00 | 1.27 ± 0.31 | 0.80 ± 0.38 | 0.95 ± 0.64 |
VE5 | 20.88 | 79.27 | 3.12 | 0.41 ± 0.06 | 1.00 ± 0.00 | 1.00 ± 0.17 | 1.3 ± 0.74 | 1.41 ± 0.84 |
VE6 | 2.61 | 31.26 | ND | 0.35 ± 0.14 | 1.00 ± 0.00 | 0.73 ± 0.12 | 2.06 ± 0.56 | 4.57 ± 3.20 |
VE7 | ND | 73.71 | 4.97 | 0.08 ± 0.02 | 1.00 ± 0.00 | 1.49 ± 0.30 | 0.33 ± 0.09a | 0.26 ± 0.11a |
VE8 | 5.93 | 13.38 | ND | 0.14 ± 0.06 | 1.00 ± 0.00 | 1.01 ± 0.28 | 1.41 ± 0.43 | 0.87 ± 0.39 |
VE9 | 5.06 | 14.07 | ND | 0.62 ± 0.08 | 1.00 ± 0.00 | 0.98 ± 0.10 | 1.03 ± 0.16 | 0.90 ± 0.12 |
VE10 | 9.42 | 21.58 | 1.86 | 0.42 ± 0.04 | 1.00 ± 0.00 | 0.97 ± 0.25 | 1.16 ± 0.62 | 1.79 ± 1.29 |
VE11 | ND | 13.62 | ND | 0.70 ± 0.07 | 1.00 ± 0.00 | 1.07 ± 0.28 | 0.58 ± 0.56 | 0.42 ± 0.43 |
VE12 | 19.79 | 133.95 | 11.71 | 0.18 ± 0.06 | 1.00 ± 0.00 | 1.22 ± 0.12 | 0.29 ± 0.41 | 0.05 ± 0.08a |
VE13 | 5.68 | 19.24 | ND | 0.14 ± 0.05 | 1.00 ± 0.00 | 1.03 ± 0.21 | 1.03 ± 0.12 | 1.86 ± 0.94 |