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Fig. 2 | BMC Plant Biology

Fig. 2

From: De novo genome assembly of a foxtail millet cultivar Huagu11 uncovered the genetic difference to the cultivar Yugu1, and the genetic mechanism of imazethapyr tolerance

Fig. 2

Whole-genome comparison of Yugu1 and Huagu11 genomes. a One-to-one syntenic blocks between Yugu1 and Huagu11 genomes. Orange lines and green lines represent Yugu1 chromosomes and Huagu11 chromosomes, respectively. The red plots in the orange lines and the cyan plots in the green lines represent the identified PAV sequences in these two genomes. b The SNP and indel distributions were aligned the Huagu11 genome to Yugu1 genome by MUMmer software to identify genetic variants. 50 K bp per window, and cyan lines represent SNP numbers per window and orange lines represent total indels length (bp) per window (including insertions and deletions). The purple lines below the x-axis represent SNP-enriched regions greater than 450 Kb. The dark arrow indicated the gene locus of AHAS, which accounted for the herbicide resistant trait of Huagu11

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