Skip to main content

Table 1 The sequences of TRs oligo probes for Avena chromosome identification by ND-FISH

From: A universal karyotypic system for hexaploid and diploid Avena species brings oat cytogenetics into the genomics era

Oligo probes

Sequences

Reference

Oligo-CCS1

CCGTTTGATAGAGGCAAAGGTGTCCCGTCTTTTGATGAGA

[23]

Oligo-oat-subtelo

CAAACATGTATCGGGTCTTACGGTCATTTTAAATCGCCCT

This study

Oligo-6C51

AACACACATGCAATGACTCTAGTGGTTGATCCATGTGTGGTTTGTGGAAAG

This study

Oligo-6C343

AGGACATATGTACATGGAGAGCCAAGGTTGGGCCAACTTTGCCACATTCT

This study

Oligo-8C355

ACTTTCTTCTGACAGGGGTAGCCCGGTGTAGCCCTCACTTGTTTTA

This study

Oligo-4C709

ATGTGATGATGTAAAACCATGTTTGGGAACATGTTGTGACAAGATCTAC

This study

Oligo-3A352

GTGCTTGCATGTGTCCCCCCTCGCATGCATGCGCTCTAACCTAGAGGCGAA

This study

Oligo-6C686

GAGCCAAGGTTGGGCCAACTTTGCCACATTCTAGGCCCCGGTTGTGACGCGGCGG

This study

Oligo-4A70

AACACTTTCAAATTAAAAAAATTATACAACTCTTAATGTAAAAGAGTGT

This study

Oligo-pAs120a

GGTTTATCTCATACTATCTGTACCTGATTAGTAATTGTTGTAACTACAACGGAATGGTTAACT

[49]

Oligo-18SrDNA

GGGCAAGTCTGGTGCCAGCAGCCGCGGT

[25]

Oligo-5SrDNA

GTACTACTCTCGCCCAAGCACGCTTAACTTCGGAGTTCTGA

[25]

Oligo-HvCSR

ACAACGACAACAACGACAATGACGAGA

[25]

Oligo-Telo

TTTAGGGTTTAGGGTTTAGGG

[24]

Oligo-(CAA)7

CAACAACAACAACAACAACAA

[24]

Oligo-(GAA)7

GAAGAAGAAGAAGAAGAAGAA

[24]

Oligo-(TAG)7

TAGTAGTAGTAGTAGTAGTAG

[24]

Oligo-(ACT)6

ACTACTACTACTACTACT

[24]

Oligo-(GT)10

GTGTGTGTGTGTGTGTGTGT

[24]