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Table 3 Candidate QTL identified through the IBS mapping. Only QTL with –log10(P) values above the Bonferroni significance threshold are shown, which was estimated using population haplotype number. The chromosome the QTL was found on (Chr) and MAGIC genetic linkage map position (Pos) are shown for each QTL hit. The SNP effect represents the fixed effect from each IBS model fitted using lme4 in R [34]. The P values were also adjusted using a false discovery rate (FDR) adjustment for total test number

From: Genetic control of iron bioavailability is independent from iron concentration in a diverse winter wheat mapping population

Year

Marker

Chr

Pos

(cM)

FDR adjusted P

Bonf. threshold

-log10(P)

SNP effect

Fe concentration

1

wsnp_Ex_rep_c67543_66165372

2B

220.7

0.1

3.68

3.95

1.14

1

BS00032035_51

5D

181.1

0.06

3.68

4.55

1.11

Bioavailability

1

Ra_c73292_443

5B

91.3

0.21

3.68

3.79

-0.36

2

Excalibur_rep_c110303_320

2 A

18

0.26

3.68

3.71

-1.09