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Table 2 Putative unigenes involved in anthocyanin and flavonoid biosynthesis between the rind and pith

From: Discovery of genes involved in anthocyanin biosynthesis from the rind and pith of three sugarcane varieties using integrated metabolic profiling and RNA-seq analysis

Unigene_id

Short Gene name

Full Gene Name

Status

CL22745Contig1

ScCHS1

Chalcone synthase

complete

CL1Contig881

ScCHS2

Chalcone synthase

complete

CL19401Contig1

ScCHS3

Chalcone synthase

partial

CL1Contig5298

ScCHI1

Chalcone–flavonone isomerase

complete

CL19316Contig1

ScCHI2

Chalcone–flavonone isomerase

complete

comp30564_c0_seq2_1

ScF3H

Flavanone 3-hydroxylase

complete

CL3124Contig1

ScF3’H1

Flavonoid 3’-monooxygenase

partial

CL3124Contig2

ScF3’H2

Flavonoid 3’-monooxygenase

partial

CL15263Contig1

ScF3’5’H1

Flavonoid 3’,5’-hydroxylase

partial

CL186Contig2

ScF3’5’H2

Flavonoid 3’,5’-hydroxylase

partial

CL1Contig6521

ScF3’5’H3

Flavonoid 3’,5’-hydroxylase

partial

CL6788Contig1

ScLDOX

Leucoanthocyanidin dioxygenase

complete

comp74919_c0_seq1_2

ScMYB

Myeloblastosis

complete

CL19110Contig1

ScBZ2

Glutathione S-transferase Bronze2

complete

CL6042Contig1

ScANR1

Anthocyanidin reductase

Partial

CL23185Contig1

ScANR2

Anthocyanidin reductase

Complete

CL28592Contig1

ScANR3

Anthocyanidin reductase

partial

CL28006Contig1

ScANR4

Anthocyanidin reductase

partial

comp35647_c0_seq1_2

ScANR5

Anthocyanidin reductase

partial

CL15295Contig1

ScANR6

Anthocyanidin reductase

partial

CL1Contig4941

ScANR7

Anthocyanidin reductase

partial

CL1Contig2216

ScFLS1

Flavonol synthase

Partial

CL576Contig1

ScFLS2

Flavonol synthase

Partial

CL576Contig2

ScFLS3

Flavonol synthase

partial

CL29339Contig1

ScBZ1_1

Anthocyanidin 3-O-glucosyltransferase

complete

comp74241_c0_seq1_2

ScBZ1_2

Anthocyanidin 3-O-glucosyltransferase

complete

CL18056Contig1

ScBZ1_3

Anthocyanidin 3-O-glucosyltransferase

complete

comp62628_c0_seq1_1

ScBZ1_4

Anthocyanidin 3-O-glucosyltransferase

partial

comp73769_c1_seq6_2

ScBZ1_5

Anthocyanidin 3-O-glucosyltransferase

complete

comp132391_c0_seq1_2

ScBZ1_6

Anthocyanidin 3-O-glucosyltransferase

partial

comp59267_c1_seq1_2

ScBZ1_7

Anthocyanidin 3-O-glucosyltransferase

partial

comp72111_c0_seq1_1

ScBZ1_8

Anthocyanidin 3-O-glucosyltransferase

partial

comp131906_c0_seq1_1

ScBZ1_9

Anthocyanidin 3-O-glucosyltransferase

partial

CL150Contig1

ScGT1_1

Anthocyanidin 5,3-O-glucosyltransferase

complete

CL1Contig3595

ScGT1_2

Anthocyanidin 5,3-O-glucosyltransferase

complete

CL8117Contig1

ScGT1_3

Anthocyanidin 5,3-O-glucosyltransferase

complete

comp53603_c2_seq1_1

ScGT1_4

Anthocyanidin 5,3-O-glucosyltransferase

Partial

CL1Contig4549

ScGT1_5

Anthocyanidin 5,3-O-glucosyltransferase

partial

CL16968Contig1

ScGT1_6

Anthocyanidin 5,3-O-glucosyltransferase

partial

comp43983_c0_seq1_2

ScGT1_7

Anthocyanidin 5,3-O-glucosyltransferase

partial

comp55939_c2_seq1_1

ScGT1_8

Anthocyanidin 5,3-O-glucosyltransferase

partial

CL3948Contig1

ScGT1_9

Anthocyanidin 5,3-O-glucosyltransferase

partial

comp111837_c0_seq1_2

ScGT1_10

Anthocyanidin 5,3-O-glucosyltransferase

partial

comp103236_c0_seq1_2

ScGT1_11

Anthocyanidin 5,3-O-glucosyltransferase

partial

CL1Contig2451

Sc5MaT_1

Malonyl-CoA: anthocyanidin

5-O-glucoside-6’’-O-malonyltransferase

complete

CL1Contig4024

Sc5MaT_2

Malonyl-CoA: anthocyanidin

5-O-glucoside-6’’-O-malonyltransferase

complete

CL7057Contig1

Sc5MaT_3

Malonyl-CoA: anthocyanidin

5-O-glucoside-6’’-O-malonyltransferase

complete

CL3290Contig1

Sc3MaT_1

Malonyl-coenzyme A: anthocyanin

3-O-glucoside-6’’-O-malonyltransferase

complete

CL1Contig5025

ScMF_1

O-methyltransferase

partial

CL1379Contig2

ScMF_2

Caffeoyl-CoA O-methyltransferase

partial