Fig. 4

WGCNA of the transcripts in AF99 and AF32. a. Gene dendrograms of whole-transcriptome profiles were constructed using average linkage hierarchical clustering, each line represents one gene. The module color underneath the cluster tree shows the result of module assignment by the Dynamic Tree Cut. b. Correlations between modules eigengenes and lines/stages. The color of each module is the same as that in (a). The gene number of each module is shown in parentheses to the bottom of the module name. See the definition of phenotype in Figure S10. The correlation coefficient and p-value are shown in each cell