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Table 1 High-throughput sequencing statistics of L. × formolongi sRNAs

From: Analysis of miRNA-mediated regulation of flowering induction in Lilium × formolongi

Category

VJ_I

VJ_II

FI_I

FI_II

FD

Total

unique

Total

unique

Total

unique

Total

unique

Total

unique

Raw reads

14,240,103

4,165,620

13,012,678

5,070,705

25,100,402

4,417,437

24,430,380

5,493,407

10,937,263

2,363,859

3ADT & length filter

3,253,881

1,696,297

1,726,013

1,370,377

8,960,668

1,903,704

4,503,056

1,379,069

5,065,486

855,271

Junk reads

43,445

18,415

44,301

25,086

55,442c

15,965

59,104

21,952

31,103

10,933

Rfam

rRNA

625,844

17,010

103,024

7038

830,461

18,275

152,864

8762

135,278

6417

tRNA

334,519

3726

271,546

3448

429,462

3870

364,860

3249

74,368

1669c

snoRNA

4261

380

5215

436

20,391

926

19,562

890

17,995

843

snRNA

4524

430

4826

523

12,468

951

8310

761

5221

489

others

35,921

1242

8421

678

97,281

1808

11,959

1010

14,357

683

Total

1,005,069

22,788

393,032

12,123

1,390,063

25,830

557,554

14,672

247,219

10,101

Repeats

8622

451

8427

458

19,758

680

10,301

708

3934

323

valid reads

9,932,250

2,427,801

10,843,854

3,662,791

14,681,011

2,471,404

19,303,311

4,077,107

5,590,925

1,487,303