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Fig. 4 | BMC Plant Biology

Fig. 4

From: Genetic control of flowering in greater yam (Dioscorea alata L.)

Fig. 4

a) GWAS on sex-determination results, b) mean FST on an SNP sliding window along the chromosome (step = 100, window = 500), c) mean coverage difference between male and female pools on a physical (bp) sliding window (step = 50,000, window = 200,000 bp), d) male-specific discordant read clusters, and e) physical versus genetic position on the reconstructed male chromosome 6. Red horizontal dashed lines, significance threshold at a risk of 0.01: (A) FDR at 1%, B) and C) using a gamma distribution fitted on empirical value distributions; red points, significant positions

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