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Table 1 Genetic markers used for mapping of the Gpa1 gene

From: Genetic analysis of the barley variegation mutant, grandpa1.a

Marker name

SNP or ploymorphism source

Marker type

Forward primer 1

Forward primer 2

Reverse primer

M1

Ebmac0415

SSR

GAAACCCATCATAGCAGC

 

AAACAGCAGCAAGAGGAG

M2

HVM54

SSR

AACCCAGTAACACCGTCCTG

 

AGTTCCCTGACCCGATGTC

M3

Gbm1437

SSR

ATTCCACTCGCCATTGTTTC

 

CACTCCGGATTGATGCTCTT

M4

GBM1498

SSR

TGCTCCAACCCAAAAGCTAC

 

GAAGACGACGAGCGGTACTC

M5

POPA1_10315

STARP

GCAACAGGAACCAGCTATGACGGGGAGGTCGGGGAAC

GACGCAAGTGAGCAGTATGACGGGGAGGTCGGGAAGG

CGTCCATCCCATTCCCCAAA

M6

POPA1_11380

STARP

GCAACAGGAACCAGCTATGACCTGTTTCTGTTTTATTTTTCTTCCG

GACGCAAGTGAGCAGTATGACCTGTTTCTGTTTTATTTTTCTCTCA

AGATCGGGGGAGTTGCACTA

M7

POPA1_10791

STARP

GCAACAGGAACCAGCTATGACGTGCCGCACACCATTG

GACGCAAGTGAGCAGTATGACGTGCCGCACACTGTTT

GACAACCCATCCAAGGCACT

M8

Bmag0749

SSR

CGGATTCTTGAGTAGTCTCTG

 

GATCTGTTTTTGTAGAACATGC

M9

POPA1_21453

STARP

GCAACAGGAACCAGCTATGACGTTGCTCACGGAAATTGG

GACGCAAGTGAGCAGTATGACGTTGCTCACGGAAACCGA

GAACCCCTGAATAGGTGGCA

M10

POPA1_10085

STARP

GCAACAGGAACCAGCTATGACCGCGGAAATCTTGTATTAACAAC

GACGCAAGTGAGCAGTATGACCGCGGAAATCTTGTATTAATCAT

AGTCTCGGCTATTCCCCACT

M11

JHI-Hv50k-2016-140,235

STARP

GCAACAGGAACCAGCTATGACCCTATGTAATTTCCAGACACATC

GACGCAAGTGAGCAGTATGACCCTATGTAATTTCCAGACAACTT

TCGCTGCATTTTGGAGACCT

M12

JHI-Hv50k-2016-140,239

STARP

GCAACAGGAACCAGCTATGACGTTTTCCTGAGAAATACCTCAC

GACGCAAGTGAGCAGTATGACGTTTTCCTGAGAAATACCCAAA

GTTGGCCTAGACGACGGTT

M13

JHI-Hv50k-2016-140,382

STARP

GCAACAGGAACCAGCTATGACAGGAAGACAGAGAGTTGACTTC

GACGCAAGTGAGCAGTATGACAGGAAGACAGAGAGTTGGTTTG

ATAAGCCCCACTTCCACCAG

M14

JHI-Hv50k-2016-140,496

STARP

GCAACAGGAACCAGCTATGACGTACTGCCGCGTGAGG

GACGCAAGTGAGCAGTATGACGTACTGCCGCGTAGGA

TGATGTACTCTCGGCAAGCG

M15

JHI-Hv50k-2016-140,683

STARP

GCAACAGGAACCAGCTATGACAGTCGATGTAATCAGCTCCC

GACGCAAGTGAGCAGTATGACAGTCGATGTAATCAGCCACA

ACAACATACGCAGCACCAAC

M16

JHI-Hv50k-2016-140,672

STARP

GCAACAGGAACCAGCTATGACTGCGCAATCACTTGCTTG

GACGCAAGTGAGCAGTATGACTGCGCAATCACTTGTTCA

ATGCCAGCAAGAGAGCATCA

M17

JHI-Hv50k-2016-140,582

STARP

GCAACAGGAACCAGCTATGACTTTTGCCTGAGTGTAATGCAC

GACGCAAGTGAGCAGTATGACTTTTGCCTGAGTGTAATGTCG

GAGCGATGGGACATGAGGAG

M18

JHI-Hv50k-2016-140,579

STARP

GCAACAGGAACCAGCTATGACATAGCAATAGCATAGCAGTGTG

GACGCAAGTGAGCAGTATGACATAGCAATAGCATAGCAGTACA

ACCAGGTTTTGCCTGAGTGT

M19

JHI-Hv50k-2016-140,869

STARP

GCAACAGGAACCAGCTATGACAGGTGAGCTTCCTCATGG

GACGCAAGTGAGCAGTATGACAGGTGAGCTTCCTTGTGA

ATTGCTTGCTCGACGCTTTG

M20

Sequence results

STARP

GCAACAGGAACCAGCTATGACCGCCGTTTTGCTCGTC

GACGCAAGTGAGCAGTATGACCGCCGTTTTGCCTGCA

AGAAAGCGCGAATACGTCCA