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Table 2 Haplotypes and genotypes of B. × wardii between B. alternifolia and B. crispa at four nuclear genes and the combined chloroplast regions (cpDNA). The code of each haplotype corresponds to those in Fig. 3

From: Natural hybridization between two butterfly bushes in Tibet: dominance of F1 hybrids promotes strong reproductive isolation

Individuals ETS-B GapC2 PPR24 PPR123 cpDNA
BHWI1 Ba1(Bw1) Ba1(Bw1) Bw6 Ba1(Bw1, Bc1) Bc3(Bw2)
  Bc3(Bw8) Bc4(Bw5) Bc2(Bw9) Bc3(Bw7)  
BHWI2 Bw2 Ta1(Tw1, Bw2, Bc1, Ja1) Bw2 Bw5 Bc1(Bw1)
  Bc3(Bw8) Bc6(Bw6, Tw2, Tc1, Kc5) Bw13 Bc3(Bw7)  
BHWI3 Bw5 Ta1(Tw1, Bw2, Bc1, Ja1) Bw6 Ba1(Bw1, Bc1) Bc1(Bw1)
  Bc5(Bw10) Bc9(Bw8) Bc5(Bw10) Bc2(Bw6)  
BHWI4 Bw5 Ta1(Tw1, Bw2, Bc1, Ja1) Ba2(Bw4) Ba1(Bw1, Bc1) Bc1(Bw1)
  Bc3(Bw8) Bc6(Bw6, Tw2, Tc1, Kc5) Bc5(Bw10) Bc3(Bw7)  
BHWI5 Ba1(Bw1) Ba1(Bw1) Bw6 Ba1(Bw1, Bc1) Bc3(Bw2)
  Bc3(Bw8) Bc4(Bw5) Bc6(Bw11) Bc3(Bw7)  
BHWI6 Ba3(Bw3) Ba1(Bw1) Bw5 Ba1(Bw1, Bc1) Bc3(Bw2)
  Bc3(Bw8) Bc6(Bw6, Tw2, Tc1, Kc5) Bw8 Bw8  
BHWI7 Ba1(Bw1) Ta1(Tw1, Bw2, Bc1, Ja1) Bw6 Ba1(Bw1, Bc1) Bc1(Bw1)
  Bw11 Bc6(Bw6, Tw2, Tc1, Kc5) Bc2(Bw9) Bc2(Bw6)  
BHWI8 Ba1(Bw1) Ba1(Bw1) Bw2 Ba2(Bw4) Bw3
  Bw13 Bw7 Bc5(Bw10) Bc3(Bw7)  
BHWI9 Bc3(Bw8) Bw4 Bw3 Bc3(Bw7) Bc3(Bw2)
  Bc3(Bw8) Bw4 Bc2(Bw9) Bw8  
BHWI10 Ba1(Bw1) Ta1(Tw1, Bw2, Bc1, Ja1) Bw2 Ba1(Bw1, Bc1) Bc1(Bw1)
  Bw12 Bc3(Bw3) Bw8 Bc2(Bw6)  
BHWI11 Ba1(Bw1) Ta1(Tw1, Bw2, Bc1, Ja1) Ba4(Bw7) Ba2(Bw4) Bw3
  Bc3(Bw8) Bc6(Bw6, Tw2, Tc1, Kc5) Bc5(Bw10) Bc3(Bw7)  
BHWI12 Ta1(Bw4) Ta1(Tw1, Bw2, Bc1, Ja1) Ta1(Tw2, Ba1, Bw2, Ja1) Bw2 Bc1(Bw1)
  Bc3(Bw8) Bc6(Bw6, Tw2, Tc1, Kc5) Bc7(Bw12) Bc3(Bw7)  
BHWI13 Ta2(Tw1, Tc1, Ba5, Bw7) Ta1(Tw1, Bw2, Bc1, Ja1) Ta1(Tw2, Ba1, Bw2, Ja1) Ba1(Bw1, Bc1) Bc1(Bw1)
  Bc3(Bw8) Bc9(Bw8) Bc9(Bw14) Bc3(Bw7)  
BHWI14 Ta2(Tw1, Tc1, Ba5, Bw7) Ba1(Bw1) Ta1(Tw2,Ba1, Bw2, Ja1) Bw3 Bc1(Bw1)
  Bc3(Bw8) Bw9 Bc2(Bw9) Bc3(Bw7)  
BHWI15 Bw6 Ta1(Tw1, Bw2, Bc1, Ja1) Ta1(Tw2, Ba1, Bw2, Ja1) Ba1(Bw1, Bc1) Bw3
  Bc3(Bw8) Bc6(Bw6, Tw2, Tc1, Kc5) Bc5(Bw10) Bc3(Bw7)  
BHWI16 Ba1(Bw1) Ta1(Tw1, Bw2, Bc1, Ja1) Ta1(Tw2, Ba1, Bw2, Ja1) Ba1(Bw1, Bc1) Bw3
  Bw9 Bc6(Bw6, Tw2, Tc1, Kc5) Bc2(Bw9) Bc2(Bw6)  
TJWI1 Tw3 Ta2(Tw3) Bc1(Tw1) Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Tw3 Tc3(Tw5) Tc2(Tw11) Tc7(Tw5)  
TJWI2 Tc2(Tw2, Bc4) Ta2(Tw3) Bc1(Tw1) Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tc3(Tw5) Tc1(Tw9) Tw4  
TJWI3 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Bc1(Tw1) Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tw7 Tc2(Tw11) Tw8  
TJWI4 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Tw8 Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tw6 Tc2(Tw11) Tw7  
TJWI5 Tc2(Tw2, Bc4) Ta2(Tw3) Bc1(Tw1) Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tc4(Tw8, Ta3) Tc8(Tw15) Tw10  
TJWI6 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Bc1(Tw1) Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tc4(Tw8, Ta3) Tc1(Tw9) Tc4(Tw3)  
TJWI7 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Tw7 Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tc6(Tw10) Tc8(Tw15) Tc7(Tw5)  
TJWI8 Tc2(Tw2, Bc4) Tw4 Tw7 Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Bc6(Bw6, Tw2, Tc1, Kc5) Tc5(Tw14) Tc7(Tw5)  
TJWI9 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Bc1(Tw1) Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tc4(Tw8, Ta3) Tw13 Tc7(Tw5)  
TJWI10 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Tw4 Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tc3(Tw5) Tc1(Tw9) Tc4(Tw3)  
TJWI11 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Tw4 Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Tw6 Bc6(Bw6, Tw2, Tc1, Kc5) Tc1(Tw9) Tc4(Tw3)  
TJWI12 Tw5 Ta1(Tw1, Bw2, Bc1, Ja1) Tw4 Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tc5(Tw9) Tc1(Tw9) Tc2(Tw2)  
TJWI13 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Tw6 Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Tw6 Bc6(Bw6, Tw2, Tc1, Kc5) Tc8(Tw15) Tc2(Tw2)  
TJWI15 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Ta1(Tw2, Ba1, Bw2, Ja1) Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta6(Tw7) Tc4(Tw8, Ta3) Tc8(Tw15) Tc7(Tw5)  
TJWI16 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Tw3 Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tc4(Tw8, Ta3) Tw12 Tc7(Tw5)  
TJWI17 Tc2(Tw2, Bc4) Ta1(Tw1, Bw2, Bc1, Ja1) Ta1(Tw2, Ba1, Bw2, Ja1) Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Tc4(Tw8, Ta3) Tw10 Tw9  
TJWI18 Tw4 Ta1(Tw1, Bw2, Bc1, Ja1) Tw5 Ta1(Tw1) Ba3(Ta1, Tc1, Tw1)
  Ta2(Tw1, Tc1, Ba5, Bw7) Bc6(Bw6, Tw2, Tc1, Kc5) Tc8(Tw15) Tc8(Tw6)  
  1. BHWI1-BHWI16 and TJWI1-TJWI13, 15-18 in the first column are 33 individuals of B. × wardii from the BH and TJ populations, respectively. “Ba”, “Bc” and “Bw” refer to B. alternifolia, B. crispa, and B. × wardii from the BH population, respectively; while “Ta”, “Tc” and “Tw” refer to B. alternifolia, B. crispa, and B. × wardii from the TJ population, respectively. In addition, “Kc” indicates B. crispa from KM and “Ja” indicates B. alternifolia from JZ
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