Table 2 RNA-seq read information for all the maize samples
Samples | Raw reads | Clean reads | Retention rate | Mapped reads | Mapped rate |
|---|---|---|---|---|---|
T121–1 | 13,871,140 | 13,443,019 | 96.91% | 11,622,834 | 86.46% |
T121–2 | 16,291,424 | 15,500,533 | 95.15% | 13,091,750 | 84.46% |
T126–1 | 17,965,773 | 17,397,315 | 96.84% | 14,993,006 | 86.18% |
T126–2 | 18,368,761 | 17,927,296 | 97.60% | 15,485,598 | 86.38% |
PH4CV-1 | 14,658,208 | 13,170,436 | 89.85% | 10,408,596 | 79.03% |
PH4CV-2 | 21,755,428 | 19,974,317 | 91.81% | 16,185,189 | 81.03% |
PH6WC-1 | 15,884,601 | 15,718,724 | 98.96% | 13,711,443 | 87.23% |
PH6WC-2 | 14,723,316 | 14,399,270 | 97.80% | 12,569,123 | 87.29% |
T121 × PH4CV-1 | 14,077,347 | 13,499,094 | 95.89% | 11,445,882 | 84.79% |
T121 × PH4CV-2 | 16,779,865 | 16,290,901 | 97.09% | 14,021,578 | 86.07% |
T121 × PH6WC-1 | 18,542,048 | 18,152,498 | 97.90% | 15,750,923 | 86.77% |
T121 × PH6WC-2 | 19,966,028 | 19,316,617 | 96.75% | 16,480,938 | 85.32% |
T121 × T126–1 | 15,417,581 | 15,241,180 | 98.86% | 13,401,570 | 87.93% |
T121 × T126–2 | 16,935,225 | 16,415,063 | 96.93% | 14,049,652 | 85.59% |
T126 × PH4CV-1 | 15,196,264 | 14,513,192 | 95.51% | 12,233,170 | 84.29% |
T126 × PH4CV-2 | 19,608,143 | 18,982,604 | 96.81% | 16,230,126 | 85.50% |
PH4CV × PH6WC-1 | 14,888,697 | 14,495,750 | 97.36% | 12,502,584 | 86.25% |
PH4CV × PH6WC-2 | 15,276,520 | 14,917,001 | 97.65% | 12,855,471 | 86.18% |
T126 × PH6WC-1 | 17,312,865 | 16,694,768 | 96.43% | 14,243,976 | 85.32% |
T126 × PH6WC-2 | 15,023,955 | 14,778,806 | 98.37% | 12,903,376 | 87.31% |
Total | 332,543,189 | 320,828,384 | 96.48% | 274,186,785 | 85.47% |