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Table 1 Top 25 hub genes of ME10 with transcripts that are highly connected with the module eigengene and highly correlated with the acquisition of desiccation tolerance

From: Gene co-expression analysis of tomato seed maturation reveals tissue-specific regulatory networks and hubs associated with the acquisition of desiccation tolerance and seed vigour

Gene ID

Description

GS.DT

p.GS.DT

MM.ME10

p.MM.ME10

Solyc02g077980.3.1

Unknown protein

0.840

1.7E-23

0.987

9.5E-67

Solyc09g082110.4.1

Late embryogenesis abundant protein D-34

0.878

5.1E-28

0.986

3.6E-65

Solyc10g078780.2.1

11 kDa late embryogenesis abundant protein

0.864

4.1E-26

0.986

4.0E-65

Solyc07g066400.1.1

seed maturation protein

0.887

3.2E-29

0.984

4.2E-63

Solyc03g115370.3.1

Diacylglycerol kinase

0.883

1.2E-28

0.984

7.0E-63

Solyc11g042800.2.1

Embryonic protein DC-8

0.842

1.1E-23

0.984

8.2E-63

Solyc02g079290.3.1

FLT/ TERMINAL FLOWER 1-like protein

0.857

2.4E-25

0.982

3.1E-61

Solyc04g072250.4.1

17.5 kDa class I heat shock protein

0.873

2.8E-27

0.981

2.7E-60

Solyc09g082100.3.1

Late embryogenesis abundant protein D-34

0.889

1.6E-29

0.980

3.7E-59

Solyc12g098900.2.1

Late embryogenesis abundant protein D-29

0.905

3.8E-32

0.980

4.1E-59

Solyc03g025810.4.1

Low-temperature-induced 65 kDa protein

0.839

2.0E-23

0.979

4.4E-58

Solyc07g065990.1.1

Oleosin S1–2-like

0.828

2.5E-22

0.979

4.7E-58

Solyc09g008770.3.1

Late embryogenesis abundant protein

0.842

1.0E-23

0.978

6.7E-58

Solyc01g098850.3.1

D(P)-binding Rossmann-fold superfamily protein

0.882

1.8E-28

0.977

5.1E-57

Solyc02g084840.3.1

Dehydrin

0.885

5.6E-29

0.977

1.1E-56

Solyc02g091390.3.1

Cold-regulated protein

0.819

1.8E-21

0.975

1.2E-55

Solyc07g062990.2.1

Late embryogenesis abundant protein 1-like

0.803

4.4E-20

0.975

1.3E-55

Solyc01g060070.3.1

Outer envelope pore protein 16–2, chloroplastic

0.824

6.3E-22

0.974

7.3E-55

Solyc03g113510.2.1

Hypothetical protein

0.817

2.7E-21

0.973

4.1E-54

Solyc12g010820.2.1

Late embryogenesis abundant protein

0.815

3.9E-21

0.973

7.2E-54

Solyc02g062770.2.1

Late embryogenesis abundant protein

0.894

2.5E-30

0.973

1.2E-53

Solyc09g015070.3.1

D(P)-linked oxidoreductase superfamily protein

0.821

1.1E-21

0.971

1.2E-52

Solyc02g071760.4.1

Oil body-associated protein 2A-like

0.809

1.3E-20

0.969

7.8E-52

Solyc12g008430.3.1

Malic enzyme

0.928

7.1E-37

0.969

1.1E-51

Solyc12g038160.2.1

Lipase

0.816

3.1E-21

0.969

1.5E-51

  1. GS. DT Gene significance value associated with desiccation tolerance, p.GS.DT p-value of the correlation, MM.ME10, module membership with ME10, p.MM.ME10 p-value of the correlation