Table 2 The 50 tomato plant DEGs associated with transcription and translation. DEGs were sorted by log2-fold change (log2FC). These DEGs were identified in the transcriptome analysis comparing psyllid-infested and uninfested tomato plants 3 weeks after infestation (P < 0.01). NCBI Blast searches were used to identify Gene IDs and protein products in tomatoes as well as their homologs in other species. Specifically, the expression changes in 44 genes (88%, in bold) would have resulted in improvements to transcription/translation pathways. These DEGs were related to post-translational modifications, miRNA processing, and gene silencing

Solyc01g087690.1

SIGD

AT5G13730

-1.06

RNA polymerase sigma factor sigD, chloroplastic

Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase; Regulates transcription of the ndhF gene which codes for a subunit of the plastid NDH [NAD(P)H dehydrogenase] complex

Decreased response to light stimulus; Decreased transcription; Decreased regulation of RNA biosynthesis

Lerbs-Mache, Silva. "Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription?." Plant molecular biology 76.3-5 (2011): 235-249.

Solyc06g073260.2

CSP41B

AT1G09340

-0.81

chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

Associates with pre-ribosomal particles in chloroplasts and participates in chloroplast ribosomal RNA metabolism; Required for chloroplast integrity and embryo development; Regulates the circadian system; Regulates heteroglycans and monosaccharide mobilization

Impaired chloroplast organization; Impaired circadian rhythm; Decreased defense response to bacteria and wounding; Decreased galactose catabolism; Decreased monosaccharide metabolism; Decreased transcription and translation; Decreased response to cold and drought; Decreased rRNA processing

Raab, Sabine, et al. "ABA-responsive RNA-binding proteins are involved in chloroplast and stromule function in Arabidopsis seedlings." Planta 224.4 (2006): 900-914.

Solyc03g097320.2

SIGA

AT1G64860

-0.72

RNA polymerase sigma factor sigA

Essential protein that regulates psaA gene expression; Modulates photosystem stoichiometry; Maintains a harmonious electron flow and photosynthetic efficiency

Decreased response to light stimulus; Decreased cellular response to redox state; Decreased DNA-templated transcription; Impaired photosystem stoichiometry adjustment

Hakimi, Mohamed-Ali, et al. "Evolutionary conservation of C-terminal domains of primary sigma70-type transcription factors between plants and bacteria." Journal of Biological Chemistry 275.13 (2000): 9215-9221.

Solyc05g055350.2

TRZ2

AT2G04530

-0.48

tRNase Z TRZ2, chloroplastic

Zinc phosphodiesterase which displays tRNA 3'-processing endonuclease activity; Involved in tRNA maturation by removing a 3'-trailer from precursor tRNA

Decreased tRNA 3'-end processing

Schiffer, Steffen, Sylvia Rösch, and Anita Marchfelder. "Assigning a function to a conserved group of proteins: the tRNA 3′-processing enzymes." The EMBO journal 21.11 (2002): 2769-2777.

Solyc11g066920.1

PCMP-H28

AT4G21065

-0.44

pentatricopeptide repeat-containing protein At4g21065

Involved in RNA modification

Decreased RNA modification

Cheng, Chia-Yi, et al. "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome." The Plant Journal 89.4 (2017): 789-804.

Solyc01g111020.2

MRL1

AT4G34830

-0.29

pentatricopeptide repeat-containing protein MRL1, chloroplastic

Regulator of the large subunit of RuBisCO; Involved in the processing and stabilization of the processed transcript

Decreased mRNA stabilization

Johnson, Xenie, et al. "MRL1, a conserved pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis." The Plant Cell 22.1 (2010): 234-248.

Solyc03g034200.2

RCF3

AT5G53060

-0.26

RNA-binding KH domain-containing protein RCF3

Negative regulator of osmotic stress-induced gene expression; Regulates thermotolerance responses under heat stress; Forms a complex with CPL1 that modulates co-transcriptional processes; Represses stress-inducible gene expression; Involved in primary miRNA processing and pre-miRNA biogenesis; Involved in JA-mediated fungal defense

Increased heat acclimation; Increased jasmonic acid-mediated signaling; Increased mRNA processing; Increased miRNA processing; Increased regulation of defense response to fungus; Increased regulation of gene expression; Increased response to osmotic stress; Increased RNA splicing

Xiong, Liming, et al. "HOS5–a negative regulator of osmotic stress-induced gene expression in Arabidopsis thaliana." The Plant Journal 19.5 (1999): 569-578.

Solyc01g099300.1

MORC6

AT1G19100

0.25

protein MICRORCHIDIA 6

Involved in RNA-directed DNA methylation during gene silencing; Regulates chromatin architecture/condensation to maintain gene silencing; Positive regulator of defense against oomycetes

Increased chromatin silencing; Increased fungal defense response; Increased DNA repair; Increased RNA-directed DNA methylation

Lorković, Zdravko J., et al. "Involvement of a GHKL ATPase in RNA-directed DNA methylation in Arabidopsis thaliana." Current Biology 22.10 (2012): 933-938.

Solyc12g005330.1

RPL8A

AT2G18020

0.25

60S ribosomal protein L8-1

Involved cytoplasmic translation

Increased cytoplasmic translation

Gordon, Sean P., et al. "Pattern formation during de novo assembly of the Arabidopsis shoot meristem." Development 134.19 (2007): 3539-3548.

Solyc05g050200.1

ERF1A

AT4G17500

0.25

eukaryotic translation initiation factor 1A

Required for maximal rate of protein biosynthesis; Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Increased formation of translation preinitiation complex; Increased translational fidelity

Li, Jigang, et al. "A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice." Journal of experimental botany 57.6 (2006): 1263-1273.

Solyc09g075640.1

FRS11

AT1G10240

0.25

FAR1-RELATED SEQUENCE 11

Transcription activator involved in regulating light control of development

Increased regulation of transcription

Joly-Lopez, Zoé, et al. "Abiotic stress phenotypes are associated with conserved genes derived from transposable elements." Frontiers in Plant Science 8 (2017): 2027.

Solyc04g056280.2

CDKC-1

AT5G10270

0.26

cyclin dependent kinase C-1

Postranscriptional modifier; Involved in protein phosphorylation; Involved in leaf growth and development; Involved in defense reponse to virus

Increased leaf development; Increased phosphorylation of RNA polymerase II C-terminal domain; Increased defense response to virus

Pischke, Melissa S., et al. "A transcriptome-based characterization of habituation in plant tissue culture." Plant Physiology 140.4 (2006): 1255-1278.

Solyc03g123640.2

APUM23

AT1G72320

0.26

pumilio homolog 23

Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs

Increased regulation of translation

Francischini, Carlos W., and Ronaldo B. Quaggio. "Molecular characterization of Arabidopsis thaliana PUF proteins–binding specificity and target candidates." The FEBS journal 276.19 (2009): 5456-5470.

Solyc05g048850.2

RH8

AT4G00660

0.27

DEAD-box ATP-dependent RNA helicase 8

ATP-dependent RNA helicase involved in mRNA turnover and mRNA decapping

Increased cytoplasmic mRNA processing body assembly and mRNA transport; Increased regulation of translation; Increased stress granule assembly; Increased viral process

Baek, Woonhee, et al. "A DEAD-box RNA helicase, RH8, is critical for regulation of ABA signalling and the drought stress response via inhibition of PP2CA activity." Plant, cell & environment 41.7 (2018): 1593-1604.

Solyc05g051790.2

NRPB5A

AT3G22320

0.27

DNA-directed RNA polymerases II and IV subunit 5A

Catalyzes the transcription of DNA into RNA; Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs

Increased transcription by RNA polymerase I & II & II

Ream, Thomas S., et al. "Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II." Molecular cell 33.2 (2009): 192-203.

Solyc11g005600.1

EIF2B

AT5G20920

0.28

eukaryotic translation initiation factor 2 subunit beta

Functions in the early steps of protein synthesis; Binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S pre-initiation complex

Increased formation of cytoplasmic translation initiation complex; Increased formation of translation preinitiation complex

Ascencio-Ibáñez, José Trinidad, et al. "Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection." Plant physiology 148.1 (2008): 436-454.

Solyc06g008970.2

XPD

AT1G03190

0.28

general transcription and DNA repair factor IIH helicase subunit XPD

Component of the general transcription and DNA repair factor IIH core comple; Plays an essential role in transcription initiation; Essential during plant growth; Negatively regulates a response to UV damage and heat stress

Increased DNA repair; Increased mitotic recombination; Increased transcription; Increased protein phosphorylation; Increased regulation of mitotic recombination; Increased response to heat, oxidative, and UV stress; Increased transcription by RNA polymerase II

Liu, Zongrang, et al. "Arabidopsis UVH6, a homolog of human XPD and yeast RAD3 DNA repair genes, functions in DNA repair and is essential for plant growth." Plant physiology 132.3 (2003): 1405-1414.

Solyc01g096290.2

RPL40A

AT2G36170

0.28

ubiquitin-60S ribosomal protein L40

Involved in protein degradation via the proteasome; Linear polymer chains formed via attachment by the initiator Met-lead during cellular signaling

Increased modification-dependent protein catabolism; Increased protein ubiquitination; Increased translation; Increased defense response to bacteria

Ditt, Renata F., et al. "The Arabidopsis thaliana transcriptome in response to Agrobacteria tumefaciens." Molecular plant-microbe interactions 19.6 (2006): 665-681.

Solyc12g008450.1

N/a

AT2G40570

0.29

tRNA A64-2'-O-ribosylphosphate transferase

Involved in charged-tRNA amino acid modification

Increased charged-tRNA amino acid modification

N/a

Solyc04g082560.2

ITSN2

N/a

0.29

intersectin-2

Adapter protein that provides indirect link between the endocytic membrane traffic and the actin assembly machinery; Regulates formation of clathrin-coated vesicles; Involved in endocytosis of integrin beta-1

Increased endocytosis; Increased dendrite extension; Increased regulation of Rho protein signal transduction; Increased viral process

Mettlen, Marcel, et al. "Endocytic accessory proteins are functionally distinguished by their differential effects on the maturation of clathrin-coated pits." Molecular biology of the cell 20.14 (2009): 3251-3260.

Solyc08g082880.2

cox1101

N/a

0.29

rsm22-cox11 tandem protein 2, mitochondrial

Involved in mitochondrion-encoded protein synthesis; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I

Increased mitochondrial respiratory chain complex IV assembly; Increased mitochondrial translation

Khalimonchuk, Oleh, et al. "Sequential processing of a mitochondrial tandem protein: insights into protein import in Schizosaccharomyces pombe." Eukaryotic cell 5.7 (2006): 997-1006.

Solyc06g062350.2

RIN1

AT5G22330

0.29

ruvB-like protein 1

Core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication, and DNA repair; Component of the NuA4 histone acetyltransferase complex involved in transcriptional activation of select genes

Increased box C/D snoRNP assembly; Increased cell differentiation; Increased chromatin remodeling; Increased flower development; Increased meristem development; Increased regulation of defense response to fungus; Increased regulation of transcription by RNA polymerase II

Heyndrickx, Ken S., and Klaas Vandepoele. "Systematic identification of functional plant modules through the integration of complementary data sources." Plant physiology 159.3 (2012): 884-901.

Solyc11g005130.1

UBN1

AT1G21610

0.30

ubinuclein-1

Required for replication-independent chromatin assembly

Increased nucleosome organization; Increased regulation of gene silencing; Increased response to salt stress

N/a

Solyc02g077320.2

SNI1

AT4G18470

0.32

SNI1 protein

Involved in DNA double-strand break repair; Negative regulator of hypersensitive response and systemic acquired resistance; Functions synergistically with NTL9/CBNAC as negative regulator of pathogen-induced PR1 expression; Suppresses defense response in the absence of pathogen challenge and is removed in response to induction

Increased response to DNA damage; Increased defense response to nematode; Increased histone H3 acetylation; Decreased defense response to pathogens; Decreased histone H3-K4 methylation; Decreased systemic acquired resistance; Increased regulation of transcription; Decreased hypersensitive response

Li, Xin, et al. "Identification and cloning of a negative regulator of systemic acquired resistance, SNI1, through a screen for suppressors of npr1-1." Cell 98.3 (1999): 329-339.

Solyc09g061340.1

PCMP-E76

AT2G13600

0.33

pentatricopeptide repeat-containing protein At2g13600

Involved in mitochondrial mRNA modification during sugar metabolism

Increased mitochondrial mRNA modification; Increased RNA modification; Increased sugar-mediated signaling pathway; Increased sugar metabolism

Zhu, Qiang, et al. "SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism." The Plant Journal 71.5 (2012): 836-849.

Solyc08g076100.2

BZIP16

AT2G35530

0.33

bZIP transcription factor 16

Transcriptional activator; G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control

Increased transcription; Increased intercellular signaling; increased photosynthesis; Increased plant growth

Shen, Huaishun, Kaiming Cao, and Xiping Wang. "AtbZIP16 and AtbZIP68, two new members of GBFs, can interact with other G group bZIPs in Arabidopsis thaliana." BMB reports 41.2 (2008): 132-138.

Solyc10g074690.1

PABN1

AT5G51120

0.33

polyadenylate-binding protein 1

Involved in the 3'-end formation of mRNA precursors

Increased mRNA processing

Cheng, Chia-Yi, et al. "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome." The Plant Journal 89.4 (2017): 789-804.

Solyc11g010950.1

ELP4

AT3G11220

0.33

elongator complex protein 4

Component of the RNA polymerase II elongator complex; Promotes organs development by modulating cell division rate; Regulates mechanisms producing carbon or importing sucrose; Involved in the repression of the abscisic acid signaling during seed germination; Required for auxin distribution or signaling; Prevents anthocyanins accumulation

Increased response to sucrose; Decreased anthocyanin metabolism; Increased cellular turnover; Increased auxin-mediated signaling; Increased regulation of carbon utilization; Increased regulation of leaf development; Increased response to oxidative stress; Increased tRNA wobble uridine modification

Nelissen, Hilde, et al. "The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth." Proceedings of the National Academy of Sciences 102.21 (2005): 7754-7759.

Solyc05g007740.1

PCMP-H25

AT2G34370

0.33

pentatricopeptide repeat-containing protein At2g34370, mitochondrial

Involved in RNA modification

Increased RNA modification

Guillaumot, Damien, et al. "Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria." Proceedings of the National Academy of Sciences 114.33 (2017): 8877-8882.

Solyc08g007270.2

HAT4

AT4G16780

0.34

homeobox-leucine zipper protein HAT4

Negative regulator of cell elongation and proliferation; Mediator of the red/far-red light effects on leaf cell expansion under shade; Negatively regulates its own expression

Increased lateral root formation; Decreased regulation of transcription; Increased red light phototransduction; Increased response to auxin and cytokinin; Increased root development; Increased secondary thickening; Increased shade avoidance; Increased shoot system morphogenesis

Schena, Mark, Alan M. Lloyd, and Ronald W. Davis. "The HAT4 gene of Arabidopsis encodes a developmental regulator." Genes & development 7.3 (1993): 367-379.

Solyc03g007100.2

CPSF160

AT5G51660

0.34

cleavage and polyadenylation specificity factor subunit 1

Play sa key role in pre-mRNA 3'-end formation

Increased mRNA polyadenylation

Herr, Alan J., et al. "Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis." Proceedings of the National Academy of Sciences 103.41 (2006): 14994-15001.

Solyc03g098420.2

PCMP-H37

AT2G01510

0.35

pentatricopeptide repeat-containing protein At2g01510

Involved in RNA modification

Increased RNA modification

Cheng, Chia-Yi, et al. "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome." The Plant Journal 89.4 (2017): 789-804.

Solyc04g074910.2

RPS21B

AT3G53890

0.36

40S ribosomal protein S21-1

Structural constituent of the ribosome

Increased chloroplast organization; Increased endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); Increased translation

Wang, Ruijuan, et al. "Balance between cytosolic and chloroplast translation affects leaf variegation." Plant physiology 176.1 (2018): 804-818.

Solyc05g005780.2

N/a

AT1G60070

0.37

AP-1 complex subunit gamma-2

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting at the trans-Golgi network and early endosomes

Increased intracellular protein transport; Increased vesicle-mediated transport

Feng, Chong, et al. "Arabidopsis adaptor protein 1G is critical for pollen development." Journal of integrative plant biology 59.9 (2017): 594-599.

Solyc06g076340.2

APUM2

AT2G29190

0.37

pumilio homolog 2

Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs

Increased regulation of translation

Francischini, Carlos W., and Ronaldo B. Quaggio. "Molecular characterization of Arabidopsis thaliana PUF proteins–binding specificity and target candidates." The FEBS journal 276.19 (2009): 5456-5470.

Solyc02g078260.1

NRPB2

AT4G21710

0.37

DNA-directed RNA polymerase II subunit 2

Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Contributes to the polymerase catalytic activity; Essential for the completion of mitosis in females

Increased production of miRNAs; Increased transcription by RNA polymerase II

Ream, Thomas S., et al. "Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II." Molecular cell 33.2 (2009): 192-203.

Solyc01g096390.2

NRPE1

AT2G40030

0.37

DNA-directed RNA polymerase V subunit 1

DNA-dependent RNA polymerase; Catalytic component of RNA polymerase V involved in RNA-directed DNA methylation-dependent silencing of endogenous repeated sequences; Essential component of siRNA production

Increased response to fungus; Increased DNA methylation; Increased posttranscriptional gene silencing; Increased transcription by RNA polymerase III

Pontier, Dominique, et al. "Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis." Genes & development 19.17 (2005): 2030-2040.

Solyc04g005690.2

N/a

AT1G14650

0.38

probable splicing factor 3A subunit 1

Involved in mRNA splicing

Increased transcription by mRNA splicing

Dou, Kun, et al. "The PRP6-like splicing factor STA1 is involved in RNA-directed DNA methylation by facilitating the production of Pol V-dependent scaffold RNAs." Nucleic acids research 41.18 (2013): 8489-8502.

Solyc07g049480.2

CPSF73-I

AT1G61010

0.39

cleavage and polyadenylation specificity factor subunit 3-I

Play sa key role in pre-mRNA 3'-end formation

Increased mRNA 3'-end processing by stem-loop binding and cleavage; Increased mRNA polyadenylation; Increased snRNA processing

Herr, Alan J., et al. "Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis." Proceedings of the National Academy of Sciences 103.41 (2006): 14994-15001.

Solyc05g047520.2

HEN2

AT2G06990

0.40

DExH-box ATP-dependent RNA helicase DExH10

Involved in the degradation of a large number of non-coding nuclear exosome substrates; Involved in the maintenance of homeotic B and C gene expression in the reproductive whorl; Regulates floral organ spacing and identity

Increased maturation of 5.8S rRNA; Increased mRNA processing; Decreased posttranscriptional gene silencing; RNA catabolic process; Increased RNA metabolism; Increased floral organ development

Western, Tamara L., et al. "HUA ENHANCER2, a putative DExH-box RNA helicase, maintains homeotic B and C gene expression in Arabidopsis." Development 129.7 (2002): 1569-1581.

Solyc02g021760.2

CPSF30

AT1G30460

0.40

30-kDa cleavage and polyadenylation specificity factor 30

Component of the cleavage and polyadenylation specificity factor complex that plays a key role in pre-mRNA 3'-end formation and poly(A) addition; Involved in post-transcriptional control of oxidative stress responses; Regulates salicylic acid production

Increased mRNA polyadenylation; Increased hypersensitive response; Increased salicylic acid mediated signaling pathway; Increased response to oxidative stress; Increased RNA processing

Delaney, Kimberly J., et al. "Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit." Plant physiology 140.4 (2006): 1507-1521.

Solyc12g049410.1

NUP107

AT3G14120

0.40

nuclear pore complex protein NUP107

Involved in mRNA export from the nucleus by posttranscriptional tethering of RNA polymerase II; Involved in protein import into the nucleus

Increased mRNA transport from nucleus; Increased protein transort into nucleus

Parry, Geraint, et al. "The Arabidopsis SUPPRESSOR OF AUXIN RESISTANCE proteins are nucleoporins with an important role in hormone signaling and development." The Plant Cell 18.7 (2006): 1590-1603.

Solyc03g025940.1

N/a

AT3G48880

0.42

F-box/LRR-repeat protein

Involved in endogenous messenger response to Gram-negative bacteria

Increased RNA signaling; Increased defense response to Gram-negative bacteria

Thieme, Christoph J., et al. "Endogenous Arabidopsis messenger RNAs transported to distant tissues." Nature Plants 1.4 (2015): 15025.

Solyc09g082520.2

RPS3AA

AT3G04840

0.47

40S ribosomal protein S3a-1

Structural constituent of the ribosome

Increased translation

Chen, I-Peng, et al. "The transcriptional response of Arabidopsis to genotoxic stress–a high-density colony array study (HDCA)." The Plant Journal 35.6 (2003): 771-786.

Solyc04g040170.1

NRPE5A

AT3G57080

0.49

DNA-directed RNA polymerase V subunit 5A

Catalyzes the transcription of DNA into RNA; Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs

Increased transcription by RNA polymerase I & II & III

Ream, Thomas S., et al. "Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II." Molecular cell 33.2 (2009): 192-203.

Solyc05g032770.2

AL4

AT5G26210

0.53

PHD finger protein ALFIN-LIKE 4

Histone-binding component that specifically recognizes H3 tails trimethylated on Lys-4

Increased chromatin organization; Increased regulation of transcription

Lee, Woo Yong, et al. "Arabidopsis ING and Alfin1-like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers." The Plant Journal 58.3 (2009): 511-524.

Solyc09g065850.2

AUX22

AT1G15580

0.64

auxin-induced protein AUX22

Repressors of early auxin response genes at low auxin concentrations

Increased auxin-activated signaling; Increased regulation of transcription

Taniguchi, Masatoshi, et al. "Identification of gravitropic response indicator genes in Arabidopsis inflorescence stems." Plant signaling & behavior 9.9 (2014): e29570.

Solyc05g012210.2

AFP3

AT3G29575

0.76

ninja-family protein AFP3

Acts as a negative regulator of abscisic acid response and stress responses

Decreased transcription; Increased signal transduction

de Torres-Zabala, Marta, et al. "Pseudomonas syringae pv. tomato hijacks the Arabidopsis abscisic acid signalling pathway to cause disease." The EMBO journal 26.5 (2007): 1434-1443.

Solyc08g007530.2

AHL1

AT4G12080

0.90

AT-hook motif nuclear-localized protein 1

Specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions; Functions in the positioning of chromatin fibers within the nucleus

Increased transcription; Increased cellular turnover

Fujimoto, Satoru, et al. "Identification of a novel plant MAR DNA binding protein localized on chromosomal surfaces." Plant molecular biology 56.2 (2004): 225-239.

Solyc01g096320.2

ATHB-12

AT3G61890

1.31

homeobox-leucine zipper protein ATHB-12

Transcription activator that acts as growth regulators in response to drought

Increased development; Increased transcription; Increased response to abscisic acid; Increased response to virus; Increased response to drought and osmotic stress

Olsson, Anna, Peter Engström, and Eva Söderman. "The homeobox genes ATHB12 and ATHB7encode potential regulators of growth in response to water deficit in Arabidopsis." Plant molecular biology 55.5 (2004): 663-677.