Table 2 Twenty most strongly differentially expressed genes of the GM vs. GNM analysis. Shown are the transcript name, |log2foldchange| ≥ 2 of the corresponding transcript, the library in which the transcript is upregulated (pattern), gene name based on T. pratense genome annotation, corresponding Phytozome description, gene name and species name of the next homologs and A. thaliana gene name, and locus name based on information available on Tair
ID | Pattern | Contig ID | |log2foldchange| ≥ 2 | Class (basis of classifiation) | Gene name T. pratense | Next homolog gene name | Next homolog species name | A. thaliana gene name | A. thaliana locus name |
|---|---|---|---|---|---|---|---|---|---|
1 | GHNM | tdn_99733 | −9.5 | Growth (M. truncatula) | Tp57577_TGAC_v2_mRNA4544.v2 | Medtr4g029550.1 | M. truncatula | – | – |
2 | GHNM | k41_54584 | −6.3 | Biotic stress (T.pratense, M. truncatula, A. thaliana) | Tp57577_TGAC_v2_mRNA28349.v2 | Medtr5g073620.1 | M. truncatula | ATEXO70B1 | AT5G58430 |
3 | GHNM | tdn_92791 | −5.5 | Abiotic/biotic stress (T.pratense, M. truncatula, A. thaliana) | Tp57577_TGAC_v2_mRNA20498.v2 | Medtr1g041150.1 | M. truncatula | ATCPK1 | AT5G04870 |
4 | GHNM | k41_130218 | −5.5 | – | – | – | – | – | – |
5 | GHNM | tdn_53091 | −4.8 | Phytohormone (M. truncatula, A. thaliana) | Tp57577_TGAC_v2_mRNA39912.v2 | Medtr4g010250.1 | M. truncatula | – | AT5G20190 |
6 | GHNM | tgg_43136 | −4.4 | Transcription (M. truncatula, A. thaliana) | Tp57577_q_v2_mRNA29629.v2 | Medtr4g098630.1 | M. truncatula | ANAC071 | AT4G17980 |
7 | GHNM | tdn_141837 | −4.3 | Abiotic stress (T.pratense, M. truncatula, A. thaliana) | Tp57577_TGAC_v2_mRNA760.v2 | Medtr2g022700.1 | M. truncatula | ATGPT2 | AT1G61800 |
8 | GHNM | tdn_40997 | −4.2 | Abiotic stress (T.pratense, M. truncatula, A. thaliana) | Tp57577_TGAC_v2_mRNA25718.v2 | Medtr4g130540.1 | M. truncatula | HSP70B | AT1G16030 |
9 | GHNM | k71_5292 | −4.1 | Biotic stress (T.pratense, M. truncatula) | Tp57577_TGAC_v2_mRNA23166.v2 | Medtr0163s0020.1 | M. truncatula | LECRK-IX.1 | AT5G10530 |
10 | GHNM | k59_6358 | −3.9 | Growth (T.pratense, M. truncatula, A. thaliana) | Tp57577_TGAC_v2_mRNA12337.v2 | Medtr3g435430.1 | M. truncatula | ATEXP15 | AT2G03090 |
11 | GHM | tdn_86219 | 8.0 | Biotic stress (T.pratense, M. truncatula, A. thaliana) | Tp57577_TGAC_v2_mRNA29036.v2 | Medtr4g066210.1 | M. truncatula | BGLU12 | AT5G42260 |
12 | GHM | k23_115785 | 8.0 | Abiotic stress (T.pratense, M. truncatula, A. thaliana) | Tp57577_TGAC_v2_mRNA22071.v2 | Glyma.01G001000.1 | G. max | – | AT5G58110 |
13 | GHM | tdn_91159 | 8.1 | Biotic stress (T.pratense, M. truncatula, A. thaliana) | Tp57577_TGAC_v2_mRNA7745.v2 | Medtr4g035870.1 | M. truncatula | – | AT5G62360 |
14 | GHM | k65_43517 | 8.3 | Phytohormone (T.pratense, A. thaliana) | Tp57577_TGAC_v2_mRNA6281.v2 | Medtr1g082750.1 | M. truncatula | ATAMI1 | AT1G08980 |
15 | GHM | tgg_18067 | 8.4 | – | Tp57577_TGAC_v2_mRNA32019.v2 | – | – | – | – |
16 | GHM | k61_38813 | 9.0 | – | – | – | – | – | – |
17 | GHM | k49_82496 | 9.0 | Abiotic/biotic stress (G. max, A. thaliana) | Tp57577_TGAC_v2_mRNA37976.v2 | Glyma.06G268800.1 | G. max | – | AT4G04790 |
18 | GHM | k67_38815 | 9.1 | Biotic stress (T.pratense) | Tp57577_TGAC_v2_mRNA41666.v2 | Medtr0062s0020.1 | M. truncatula | – | – |
19 | GHM | k45_11164 | 9.6 | Transcription (T.pratense) | Tp57577_TGAC_v2_mRNA29953.v2 | Medtr3g092510.1 | M. truncatula | ATRBP37 | AT4G10610 |
20 | GHM | tdn_25484 | 9.6 | Growth (Phaseolus vulgaris) | Tp57577_TGAC_v2_mRNA13093.v2 | Phvul.006G033800.1 | Phaseolus vulgaris | – | – |