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Table 2 Twenty most strongly differentially expressed genes of the GM vs. GNM analysis. Shown are the transcript name, |log2foldchange| ≥ 2 of the corresponding transcript, the library in which the transcript is upregulated (pattern), gene name based on T. pratense genome annotation, corresponding Phytozome description, gene name and species name of the next homologs and A. thaliana gene name, and locus name based on information available on Tair

From: Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense)

ID

Pattern

Contig ID

|log2foldchange| ≥ 2

Class (basis of classifiation)

Gene name T. pratense

Next homolog gene name

Next homolog species name

A. thaliana gene name

A. thaliana locus name

1

GHNM

tdn_99733

−9.5

Growth (M. truncatula)

Tp57577_TGAC_v2_mRNA4544.v2

Medtr4g029550.1

M. truncatula

2

GHNM

k41_54584

−6.3

Biotic stress (T.pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA28349.v2

Medtr5g073620.1

M. truncatula

ATEXO70B1

AT5G58430

3

GHNM

tdn_92791

−5.5

Abiotic/biotic stress (T.pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA20498.v2

Medtr1g041150.1

M. truncatula

ATCPK1

AT5G04870

4

GHNM

k41_130218

−5.5

5

GHNM

tdn_53091

−4.8

Phytohormone (M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA39912.v2

Medtr4g010250.1

M. truncatula

AT5G20190

6

GHNM

tgg_43136

−4.4

Transcription (M. truncatula, A. thaliana)

Tp57577_q_v2_mRNA29629.v2

Medtr4g098630.1

M. truncatula

ANAC071

AT4G17980

7

GHNM

tdn_141837

−4.3

Abiotic stress (T.pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA760.v2

Medtr2g022700.1

M. truncatula

ATGPT2

AT1G61800

8

GHNM

tdn_40997

−4.2

Abiotic stress (T.pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA25718.v2

Medtr4g130540.1

M. truncatula

HSP70B

AT1G16030

9

GHNM

k71_5292

−4.1

Biotic stress (T.pratense, M. truncatula)

Tp57577_TGAC_v2_mRNA23166.v2

Medtr0163s0020.1

M. truncatula

LECRK-IX.1

AT5G10530

10

GHNM

k59_6358

−3.9

Growth (T.pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA12337.v2

Medtr3g435430.1

M. truncatula

ATEXP15

AT2G03090

11

GHM

tdn_86219

8.0

Biotic stress (T.pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA29036.v2

Medtr4g066210.1

M. truncatula

BGLU12

AT5G42260

12

GHM

k23_115785

8.0

Abiotic stress (T.pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA22071.v2

Glyma.01G001000.1

G. max

AT5G58110

13

GHM

tdn_91159

8.1

Biotic stress (T.pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA7745.v2

Medtr4g035870.1

M. truncatula

AT5G62360

14

GHM

k65_43517

8.3

Phytohormone (T.pratense, A. thaliana)

Tp57577_TGAC_v2_mRNA6281.v2

Medtr1g082750.1

M. truncatula

ATAMI1

AT1G08980

15

GHM

tgg_18067

8.4

Tp57577_TGAC_v2_mRNA32019.v2

16

GHM

k61_38813

9.0

17

GHM

k49_82496

9.0

Abiotic/biotic stress (G. max, A. thaliana)

Tp57577_TGAC_v2_mRNA37976.v2

Glyma.06G268800.1

G. max

AT4G04790

18

GHM

k67_38815

9.1

Biotic stress (T.pratense)

Tp57577_TGAC_v2_mRNA41666.v2

Medtr0062s0020.1

M. truncatula

19

GHM

k45_11164

9.6

Transcription (T.pratense)

Tp57577_TGAC_v2_mRNA29953.v2

Medtr3g092510.1

M. truncatula

ATRBP37

AT4G10610

20

GHM

tdn_25484

9.6

Growth (Phaseolus vulgaris)

Tp57577_TGAC_v2_mRNA13093.v2

Phvul.006G033800.1

Phaseolus vulgaris