Skip to main content

Table 1 Overview of high-throughput sequencing datasets

From: Transcriptomic and genome-wide association study reveal long noncoding RNAs responding to nitrogen deficiency in maize

Sample

Raw reads

(mRNA)

Clean reads

(mRNA)

Mapped mRNA

Raw reads

(sRNA)

Clean reads

(sRNA)

Total sRNA

Mapped sRNA

HN_178L1

109,909,236

103,469,546

87,028,986 (84.11%)

13,280,860

12,997,834

10,034,480

9,092,731 (90.61%)

HN_178L2

98,882,294

92,738,214

77,601,590 (83.68%)

13,386,049

13,013,518

11,416,614

10,586,874 (92.73%)

HN_178L3

112,394,988

107,414,484

91,656,287 (85.33%)

14,543,122

14,230,805

11,286,848

10,204,716 (90.41%)

HN_178R1

107,762,888

103,079,810

66,664,905 (64.67%)

14,487,323

14,182,798

10,576,881

3,754,075 (35.49%)

HN_178R2

113,741,976

107,492,062

69,938,707 (65.06%)

12,788,134

12,544,973

9,729,248

3,298,959 (33.91%)

HN_178R3

112,270,478

105,413,706

69,146,376 (65.6%)

14,253,769

13,962,951

9,719,839

3,346,704 (34.43%)

LN_178L1

112,309,946

107,045,930

91,314,837 (85.3%)

14,953,702

14,688,124

12,241,826

11,194,567 (91.45%)

LN_178L2

86,345,420

81,918,980

70,017,448 (85.47%)

14,796,171

14,527,123

8,584,463

7,808,736 (90.96%)

LN_178L3

89,499,196

85,098,370

72,826,546 (85.58%)

13,941,202

13,607,151

10,073,249

9,268,334 (92.01%)

LN_178R1

87,421,586

81,198,490

56,714,397 (69.85%)

13,320,127

13,046,233

9,657,102

5,046,601 (52.26%)

LN_178R2

103,512,304

99,661,226

68,242,687 (68.47%)

14,165,435

13,850,479

10,900,885

5,754,381 (52.79%)

LN_178R3

107,537,818

101,322,926

71,234,057 (70.3%)

14,924,043

14,620,945

10,581,227

5,504,041 (52.02%)