Skip to main content

Table 3 List of 33 differentially expressed proteins after comparison samples D vs. C

From: Transcriptional and proteomic insights into phytotoxic activity of interspecific potato hybrids with low glycoalkaloid contents

ID

Protein accession numbersa

Protein

q-value

Peptidesb

Fold change

(D/C)c

Primary metabolism

1

M1CC20 XP_006339814.1

Similar to: formamidase

only in C

14

 

2

M1BEV1 XP_006364443.1

Similar to: non-symbiotic hemoglobin 2

only in C

4

 

3

M1AL00 XP_006363768.1

Similar to: ferredoxin-dependent glutamate synthase, chloroplastic

0.00015

457

0.81

4

M1CK21, M1CK23 XP_006347295.1

Similar to: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

0.00028

163

0.71

5

M1AZB4 XP_006349675.1

Similar to: Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

0.00106

152

0.72

6

P04045 NP_001275215.1

Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic

0.02116

93

1.50

7

P32811 NP_001275118.1

Alpha-glucan phosphorylase, H isozyme

0.01682

89

0.61

8

M0ZYC1

Protein disulfide-isomerase

0.02141

115

1.45

9

M1AIV9

Pectinesterase

0.00106

94

1.72

Amino acid metabolism

10

M1BCZ5, P54260 NP_001275291.1

Aminomethyltransferase, mitochondrial

0.04385

247

0.78

11

M1AZP7, P31212 XP_006366786.1

Threonine dehydratase biosynthetic (Fragment)

0.00162

153

1.37

12

M1BH63

Similar to: acetylornithine deacetylase

0.00015

74

2.43

Cell structure

13

M1AJ37, M1AJ38 XP_006351160.1

Similar to: Tetratricopeptide repeat superfamily protein

only in C

3

 

14

M1AN84 XP_006362437.1, M1BTR0 XP_006348847.1

Similar to: Protein trichome birefringence-like

only in D

6

 

15

M1BT25 XP_006338671.1

Similar to: lysine histidine transporter 1

only in D

5

 

16

M1A9U0 XP_006357191.1

Similar to: 30S ribosomal protein S21

0.02471

24

3.28

Protein turnover

17

M1AMY3, M1AMZ0 XP_006353922.1

Similar to: Kunitz-type protease inhibitor D

0.00015

42

7.82

18

P58521,

P58518,

P58520,

M1AKE5,

P16348,

P17979,

Aspartic protease inhibitor 9

Aspartic protease inhibitor 3 (Fragment)

Aspartic protease inhibitor 6 (Fragment)

Similar to: Aspartic protease inhibitor 5

Aspartic protease inhibitor 11

Aspartic protease inhibitor 8

0.00161

8

2.94

19

P37842, M1A5P8, M1A5Q3, M1A5P9

Multicystatin, Cysteine proteinase inhibitor

0.00015

87

10.07

20

M1C4F2, M1C4F3 XP_006364268.1

Similar to: Aspartyl protease family protein

0.00131

57

2.87

21

P31427 NP_001305566.1

Leucine aminopeptidase, chloroplastic

0.00015

80

2.58

Stress and defense

22

M1AGK5

Similar to: basic endochitinase

only in D

13

 

23

M0ZMG2

Similar to: Acidic endochitinase Q

0.00015

54

3.17

24

M1D578

Peroxidase

0.00132

53

2.11

25

M1APC7, M1APC8, M1APC9 XP_006365633.2

Similar to: Glucan endo-1,3-beta-glucosidase, acidic

0.00015

104

2.42

26

M1APC4

Similar to: Glucan endo-1,3-beta-glucosidase, acidic

0.00015

13

47.96

27

M1CX91

Similar to: glucan endo-1,3-beta-glucosidase, acidic

0.00162

50

2.32

28

M1APC5

Similar to: glucan endo-1,3-beta-glucosidase, acidic

0.00527

16

2.42

29

Q941G6 NP_001275095.1

Pathogenesis-related protein 1b

0.00233

42

2.60

30

M1BPP7 AFW90570.1

Pathogenesis-related protein P2

0.00015

36

5.70

31

M0ZMA9 XP_006340889.1

Similar to: pathogenesis-related protein STH-2

0.00015

80

2.74

32

M1CBM0 XP_006349319.1

Similar to: stromal 70 kDa heat shock-related protein, chloroplastic

0.00713

197

0.77

33

P32111, M0ZQ21, M0ZQ26 XP_006367669.1

Probable glutathione S-transferase

0.04449

63

1.71

  1. a Accession number according to UniProt/NCBI
  2. b Number of peptides matched to predicted protein sequence
  3. c Fold change (D/C) derived by comparison of relative protein intensity between the bulk D and the bulk C, values above fold change > 1 are characteristic for D sample
  4. ns - non significant
  5. bolded – protein that abundance is correlated with its gene expression from RNA-seq experiment