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Table 2 FPKM value statistics of 23 candidate genes in the closed modules

From: Identification of the regulatory networks and hub genes controlling alfalfa floral pigmentation variation using RNA-sequencing analysis

Gene name

Isoform ID

FPKM value

C-S1

C-S2

C-S3

C-S4

M-S1

M-S2

M-S3

M-S4

PAL1

PB.11849.10|chr7:40942885–40960253(+)|i2_LQ_samplef2cfa8|c97668/f1p0/2837

35.55

35.96

23.56

14.21

13.01

13.55

13.41

27.42

PAL2

PB.11849.12|chr7:40942885–40959874(+)|i2_LQ_samplef2cfa8|c71112/f1p0/2392

11.03

12.11

7.05

7.75

6.82

5.44

7.74

12.71

PAL3

PB.11849.14|chr7:40942885–40960512(+)|i3_LQ_samplef2cfa8|c5006/f1p3/3081

15.97

14.52

9.46

10.16

7.08

5.73

7.73

12.41

PAL4

PB.11849.16|chr7:40942887–40959833(+)|i2_LQ_samplef2cfa8|c94554/f1p1/2514

21.12

12.71

8.35

4.72

7.52

2.90

4.04

3.68

PAL6

PB.11849.2|chr7:40942885–40959392(+)|i1_LQ_samplef2cfa8|c131710/f1p63/1911

153.74

108.77

68.88

52.63

89.36

40.94

35.96

53.15

PAL7

PB.11849.3|chr7:40942885–40959926(+)|i2_HQ_samplef2cfa8|c113826/f130p0/2449

43.81

38.00

33.44

24.79

26.81

24.34

26.89

49.16

PAL8

PB.11849.4|chr7:40942885–40945992(+)|i2_LQ_samplef2cfa8|c4595/f1p3/2499

92.78

61.43

41.47

35.18

52.91

30.09

20.42

28.56

PAL9

PB.11849.8|chr7:40942885–40959918(+)|i2_LQ_samplef2cfa8|c27489/f1p1/2504

149.34

116.95

84.52

61.45

99.89

56.62

49.55

91.97

PAL15

PB.9841.1|chr5:43212802–43217702(−)|i2_HQ_samplef2cfa8|c6525/f8p0/2317

7.40

6.06

4.26

2.93

6.86

4.36

3.01

4.45

4CL18

PB.5838.1|chr4:349590–353192(+)|i1_HQ_samplef2cfa8|c237238/f40p8/1909

83.07

62.39

41.54

28.99

30.55

16.48

15.56

51.90

4CL22

PB.8087.5|chr4:53453111–53459491(+)|i1_LQ_samplef2cfa8|c10179/f1p0/1987

3.41

3.27

0.51

5.77

0.46

0.20

0.36

1.02

CHS1

PB.10727.1|chr7:5288756–5290374(−)|i1_LQ_samplef2cfa8|c23258/f3p20/1452

10.24

2.46

2.49

8.30

4.75

2.61

1.14

8.10

CHS2

PB.10728.1|chr7:5301940–5316126(+)|i1_LQ_samplef2cfa8|c190118/f2p13/1386

34.31

6.70

4.45

31.23

15.62

6.70

4.04

66.58

CHS4

PB.10728.3|chr7:5301944–5316192(+)|i1_HQ_samplef2cfa8|c217277/f2p10/1333

15.81

1.35

2.35

18.09

9.13

3.34

2.27

23.23

CHS8

PB.1696.1|chr1:44128070–44142309(+)|i1_LQ_samplef2cfa8|c11658/f1p17/1523

35.79

9.14

7.26

22.11

21.65

8.89

6.83

55.98

CHR1

PB.9832.2|chr5:42889648–42891090(+)|i1_LQ_samplef2cfa8|c117495/f1p6/1258

22.31

5.33

3.37

24.62

20.12

6.06

3.31

50.52

CHR2

PB.9833.6|chr5:42874302–42875653(−)|i1_LQ_samplef2cfa8|c203391/f1p6/1151

6.33

1.70

1.97

6.82

5.77

2.06

1.81

21.22

CHR3

PB.9833.7|chr5:42883325–42884800(−)|i1_LQ_samplef2cfa8|c126525/f1p6/1270

14.73

2.13

3.79

9.10

10.79

2.13

0.68

30.23

F3’H4

PB.7478.2|chr4:42392721–42394930(−)|i1_HQ_samplef2cfa8|c1984/f8p1/1981

9.37

4.63

5.21

10.27

11.26

9.17

4.75

10.66

DFR1

PB.339.2|chr1:7156508–7160534(−)|i1_HQ_samplef2cfa8|c21297/f2p0/1255

18.91

75.03

123.51

36.44

16.53

3.76

1.94

1.33

DFR2

PB.340.1|chr1:7164081–7167125(−)|i1_LQ_samplef2cfa8|c4738/f1p0/1273

15.51

31.71

45.29

22.74

9.27

7.72

8.19

15.33

UFGT22

PB.11876.1|chr7:41535946–41537368(+)|i1_HQ_samplef2cfa8|c67068/f2p2/1422

19.33

29.03

29.83

50.50

4.40

3.04

4.97

14.76

UFGT23

PB.11878.1|chr7:41563371–41564959(+)|i1_LQ_samplef2cfa8|c116694/f1p0/1538

32.07

41.14

42.39

51.69

16.29

18.70

15.55

34.02