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Table 2 FPKM value statistics of 23 candidate genes in the closed modules

From: Identification of the regulatory networks and hub genes controlling alfalfa floral pigmentation variation using RNA-sequencing analysis

Gene name Isoform ID FPKM value
C-S1 C-S2 C-S3 C-S4 M-S1 M-S2 M-S3 M-S4
PAL1 PB.11849.10|chr7:40942885–40960253(+)|i2_LQ_samplef2cfa8|c97668/f1p0/2837 35.55 35.96 23.56 14.21 13.01 13.55 13.41 27.42
PAL2 PB.11849.12|chr7:40942885–40959874(+)|i2_LQ_samplef2cfa8|c71112/f1p0/2392 11.03 12.11 7.05 7.75 6.82 5.44 7.74 12.71
PAL3 PB.11849.14|chr7:40942885–40960512(+)|i3_LQ_samplef2cfa8|c5006/f1p3/3081 15.97 14.52 9.46 10.16 7.08 5.73 7.73 12.41
PAL4 PB.11849.16|chr7:40942887–40959833(+)|i2_LQ_samplef2cfa8|c94554/f1p1/2514 21.12 12.71 8.35 4.72 7.52 2.90 4.04 3.68
PAL6 PB.11849.2|chr7:40942885–40959392(+)|i1_LQ_samplef2cfa8|c131710/f1p63/1911 153.74 108.77 68.88 52.63 89.36 40.94 35.96 53.15
PAL7 PB.11849.3|chr7:40942885–40959926(+)|i2_HQ_samplef2cfa8|c113826/f130p0/2449 43.81 38.00 33.44 24.79 26.81 24.34 26.89 49.16
PAL8 PB.11849.4|chr7:40942885–40945992(+)|i2_LQ_samplef2cfa8|c4595/f1p3/2499 92.78 61.43 41.47 35.18 52.91 30.09 20.42 28.56
PAL9 PB.11849.8|chr7:40942885–40959918(+)|i2_LQ_samplef2cfa8|c27489/f1p1/2504 149.34 116.95 84.52 61.45 99.89 56.62 49.55 91.97
PAL15 PB.9841.1|chr5:43212802–43217702(−)|i2_HQ_samplef2cfa8|c6525/f8p0/2317 7.40 6.06 4.26 2.93 6.86 4.36 3.01 4.45
4CL18 PB.5838.1|chr4:349590–353192(+)|i1_HQ_samplef2cfa8|c237238/f40p8/1909 83.07 62.39 41.54 28.99 30.55 16.48 15.56 51.90
4CL22 PB.8087.5|chr4:53453111–53459491(+)|i1_LQ_samplef2cfa8|c10179/f1p0/1987 3.41 3.27 0.51 5.77 0.46 0.20 0.36 1.02
CHS1 PB.10727.1|chr7:5288756–5290374(−)|i1_LQ_samplef2cfa8|c23258/f3p20/1452 10.24 2.46 2.49 8.30 4.75 2.61 1.14 8.10
CHS2 PB.10728.1|chr7:5301940–5316126(+)|i1_LQ_samplef2cfa8|c190118/f2p13/1386 34.31 6.70 4.45 31.23 15.62 6.70 4.04 66.58
CHS4 PB.10728.3|chr7:5301944–5316192(+)|i1_HQ_samplef2cfa8|c217277/f2p10/1333 15.81 1.35 2.35 18.09 9.13 3.34 2.27 23.23
CHS8 PB.1696.1|chr1:44128070–44142309(+)|i1_LQ_samplef2cfa8|c11658/f1p17/1523 35.79 9.14 7.26 22.11 21.65 8.89 6.83 55.98
CHR1 PB.9832.2|chr5:42889648–42891090(+)|i1_LQ_samplef2cfa8|c117495/f1p6/1258 22.31 5.33 3.37 24.62 20.12 6.06 3.31 50.52
CHR2 PB.9833.6|chr5:42874302–42875653(−)|i1_LQ_samplef2cfa8|c203391/f1p6/1151 6.33 1.70 1.97 6.82 5.77 2.06 1.81 21.22
CHR3 PB.9833.7|chr5:42883325–42884800(−)|i1_LQ_samplef2cfa8|c126525/f1p6/1270 14.73 2.13 3.79 9.10 10.79 2.13 0.68 30.23
F3’H4 PB.7478.2|chr4:42392721–42394930(−)|i1_HQ_samplef2cfa8|c1984/f8p1/1981 9.37 4.63 5.21 10.27 11.26 9.17 4.75 10.66
DFR1 PB.339.2|chr1:7156508–7160534(−)|i1_HQ_samplef2cfa8|c21297/f2p0/1255 18.91 75.03 123.51 36.44 16.53 3.76 1.94 1.33
DFR2 PB.340.1|chr1:7164081–7167125(−)|i1_LQ_samplef2cfa8|c4738/f1p0/1273 15.51 31.71 45.29 22.74 9.27 7.72 8.19 15.33
UFGT22 PB.11876.1|chr7:41535946–41537368(+)|i1_HQ_samplef2cfa8|c67068/f2p2/1422 19.33 29.03 29.83 50.50 4.40 3.04 4.97 14.76
UFGT23 PB.11878.1|chr7:41563371–41564959(+)|i1_LQ_samplef2cfa8|c116694/f1p0/1538 32.07 41.14 42.39 51.69 16.29 18.70 15.55 34.02