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Table 6 Differentially expressed miRNAs between HN and LN treatments and their predicted target gene functions

From: Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

ClustermiRNA IDAbundance (RPM)P- valueAbundance (RPM)P- valueAbundance (RPM)P- valueTarget function
LN7HN7LN17HN17LN27HN27 
Knownbdi-miR156b-5p19814.27E-02  
tae-miR159a-p518381.75E-02  
osa-miR159a.1_L + 1 41851.39E-02MYB; WD40 repeat-like protein
ata-miR164a-5p 19544.90E-02glutathione S-transferase; MAP kinase;
ata-miR169d-5p 7232.13E-02protein serine/threonine kinase; ABC transporter C family member 13
ata-miR169d-3p_L-2R + 2 27928.22E-05galactinol--sucrose galactosyltransferase 2; E3 ubiquitin-protein ligase
ata-miR172b-5p 4321.38E-03
sbi-miR399a271135.40E-0391091.05E-03 Oxidoreductase; transcription factor
hvu-miR39924544.73E-03 UDP-glucosyltransferase; transcription factor
ata-miR528-5p     3232.20E-02lectin-rich repeat receptor kinase
osa-miR530-5p_R + 1_1ss20AG5313.22E-020112.57E-03 
osa-miR530-5p_L + 1 0304.62E-03fructose-bisphosphate aldolase; SCF ubiquitin ligase complex
osa-miR8271745662.36E-05 spx-domain-contain; Phenylalanyl-tRNA synthetase
tae-miR9653a-3p 18109.46E-04
tae-miR9659-3p5506.03E-03__ __ 
tae-miR9661-5p_1ss14GA__ 2205.49E-03
tae-miR9664–3p_L-11502.00E-0229624.34E-03551512.29E-03RPM1; Gibberellin receptor; peptidyl-prolyl cis-trans isomerase;
tae-miR9666a-3p 48129111.38E-07Alternative splicing regulator; regulatory protein NPR5-like
tae-miR9666b-3p 6743182.57E-04stress response
tae-miR9672a-3p_L + 2R-215414.01E-021955.50E-02replication factor C subunit 1
tae-miR9774_L + 2 107421.12E-03
tae-miR9777_L + 2 14462.94E-02geraniol 8-hydroxylase-like; SCF ubiquitin ligase
NovelPC-3p-40666_993201.06E-02  transcription factor activity
PC-5p-11080_75972211.73E-02 0303.60E-03
PC-5p-26413_2152343.03E-022394.43E-021105.99E-03BRI 1-associated receptor kinase 1-like; LRR receptor-like serine/threonine-protein kinase
PC-3p-43479_872454.85E-02  
tae-miR9655-p529366682.87E-04  oxidation-reduction process; transcription factor
PC-5p-16963_436  32918.60E-040741.78E-02
tae-miR1137a-p3_1ss9CT  9251.92E-02 
PC-3p-15988_474   206519.29E-04peroxidase activity
PC-5p-6533_1330   269473.16E-03regulation of transcription
PC-3p-33976_137   2503.29E-03RPM1
PC-5p-21478_303   77212.41E-02lectin S-receptor-like kinase
PC-5p-36040_123   2493.25E-02protein disulfide isomerase; endopeptidase
tae-miR9666a-p5   101303.22E-05
tae-miR2916-p3_2ss2TC17CA   27,73670491.51E-03fructose-bisphosphate aldolase; PRM1; peroxidase
tae-miR2916-p5_2ss2AG17TG   955728685.04E-03glutathione S-transferase; DELLAL
tae-miR2592bj-p3_2ss12TC19AT   3801351.72E-02protein serine/threonine kinase activity; RPM1;
PC-3p-21085_312   3441.36E-03
PC-3p-21502_303   0251.97E-03metalloendopeptidase activity; MYB
PC-5p-9458_913   01333.25E-03
PC-5p-4529_1828   621441.15E-02
PC-3p-11233_746   9332.87E-02metalloendopeptidase activitys
tae-miR9783-p3_2ss5AG18AC   4594.41E-04protein RPM1-like
tae-miR9657c-p5_1ss20TC   171145.39E-04Leucine-rich receptor-like protein kinase;
tae-miR5384-p5   1324895.66E-04UDP-glycosyltransferase; transcription factor
tae-miR9779-p3   11932.83E-03hexose transmembrane transport
tae-miR815c-p5_2ss6CT21CT   21514.56E-03UDP-arabinose 4-epimerase; TGA2-like; Dnaj
tae-miR1127b-p5_1ss3TC   0206.05E-03
tae-miR1122c-p3   17464.34E-02phosphatase HAL2; protein kinase
  1. aAbundance is represented by normalized reads (reads per million of total miRNA reads (RPM))
  2. bRPM ≥20 in these libraries
  3. cThe values are the means of three biological replicates
  4. dP-value < 0.05 (5.00E-02) means a significant difference between HN and LN