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Table 2 QTL detected for pericarp thickness in the BC4F3 population

From: QTL mapping and transcriptome analysis identify candidate genes regulating pericarp thickness in sweet corn

Trait

QTL name

Chra

CI (bp)b

QTL region (cM)

LODc

ADDd

R2(%)e

2014FS

qPT1–1

1

289,632,655–291,951,018

292.01–296.98

2.76

12.37

6.76

qPT1–2

1

294,334,812–295,560,828

273.97–274.01

2.27

3.02

3.36

qPT10–1

10

73,141,877–74,489,414

0–5.39

2.72

13.02

6.72

qPT10–2

10

51,051,991–53,058,997

34.48–35.56

2.22

12.97

6.64

qPT10–3

10

49,740,097–50,781,644

89.26–89.32

2.16

12.96

6.69

qPT10–4

10

31,389,610–33,625,026

105.62–105.73

2.1

12.95

6.65

qPT10–5

10

144,631,242–145,532,401

233.54–233.57

3.27

14.00

7.78

2015FS

qPT5

5

14,148,610–18,559,963

39.86–42.01

2.26

14.66

7.62

qPT6

6

117,425,264

204.24

2.92

16.69

9.88

qPT10–5

10

144,631,242–145,532,401

233.54–233.57

4.12

15.74

8.82

2016FS

qPT7

7

67,564,733–69,008,076

231.99–232.04

2.21

14.62

7.92

qPT10–5

10

144,631,242–145,532,401

233.54–233.57

7.13

22.61

13.84

Average FS

qPT1–3

1

295,869,898

286.16

2.29

2.42

3.22

qPT10–5

10

144,631,242–145,532,401

233.54–233.57

4.34

30.40

35.38

  1. aChr chromosome
  2. bThe physical position corresponding to the 95% confidence interval for the detected QTL
  3. cLOD the logarithm of odds score
  4. dPositive and negative values indicated additive effects by the alleles of M03 and M08, respectively
  5. eR2 the phenotypic variance explained by an individual QTL