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Table 4 List of EMC meiosis-related differentially expressed lncRNAs in the autotetraploid rice

From: Global identification and analysis revealed differentially expressed lncRNAs associated with meiosis and low fertility in autotetraploid rice

DEL-EMCRegulationTargetsAnnotationRegulationsmall RNAs precursorsTransposable elementsReference
TCONS_00019924upLOC_Os05g06460dihydrolipoyl dehydrogenase, putative, expresseddown Class I and Class IIKubo et al. [34]
TCONS_00023646downLOC_Os01g67850zinc finger, RING-type, putative, expresseddown Class I and Class IIWu et al. [35]
TCONS_00037710downLOC_Os06g44300WAX2, putative, expresseddown Class IIKubo et al. [34]
TCONS_00115107downLOC_Os01g08560DnaK family protein, putative, expresseddown Class IIKubo et al. [34]
TCONS_00121908downLOC_Os02g46460peptide transporter PTR2, putative, expresseddown Class IIWu et al. [35]
downLOC_Os06g12740expressed proteindown Class IIKubo et al. [34]
downLOC_Os08g45170carboxyl-terminal peptidase, putative, expresseddown Class IIKubo et al. [34]
TCONS_00134306downLOC_Os02g41630phenylalanine ammonia-lyase, putative, expresseddown Class I and Class IIKubo et al. [34]
TCONS_00144592downLOC_Os03g15960hsp20/alpha crystallin family protein, putative, expresseddown Class IIKubo et al. [34]
downLOC_Os12g39420nucleobase-ascorbate transporter, putative, expresseddown Class IIKubo et al. [34]
  1. Up: up-regulated in autotetraploid rice
  2. Down: down-regulated in autotetraploid rice
  3. Small RNAs precursors: DEL serves as miRNAs/phasiRNAs precursors
  4. Class I: Retrotransposons; Class II: DNA Transposons