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Table 4 List of EMC meiosis-related differentially expressed lncRNAs in the autotetraploid rice

From: Global identification and analysis revealed differentially expressed lncRNAs associated with meiosis and low fertility in autotetraploid rice

DEL-EMC Regulation Targets Annotation Regulation small RNAs precursors Transposable elements Reference
TCONS_00019924 up LOC_Os05g06460 dihydrolipoyl dehydrogenase, putative, expressed down   Class I and Class II Kubo et al. [34]
TCONS_00023646 down LOC_Os01g67850 zinc finger, RING-type, putative, expressed down   Class I and Class II Wu et al. [35]
TCONS_00037710 down LOC_Os06g44300 WAX2, putative, expressed down   Class II Kubo et al. [34]
TCONS_00115107 down LOC_Os01g08560 DnaK family protein, putative, expressed down   Class II Kubo et al. [34]
TCONS_00121908 down LOC_Os02g46460 peptide transporter PTR2, putative, expressed down   Class II Wu et al. [35]
down LOC_Os06g12740 expressed protein down   Class II Kubo et al. [34]
down LOC_Os08g45170 carboxyl-terminal peptidase, putative, expressed down   Class II Kubo et al. [34]
TCONS_00134306 down LOC_Os02g41630 phenylalanine ammonia-lyase, putative, expressed down   Class I and Class II Kubo et al. [34]
TCONS_00144592 down LOC_Os03g15960 hsp20/alpha crystallin family protein, putative, expressed down   Class II Kubo et al. [34]
down LOC_Os12g39420 nucleobase-ascorbate transporter, putative, expressed down   Class II Kubo et al. [34]
  1. Up: up-regulated in autotetraploid rice
  2. Down: down-regulated in autotetraploid rice
  3. Small RNAs precursors: DEL serves as miRNAs/phasiRNAs precursors
  4. Class I: Retrotransposons; Class II: DNA Transposons