Table 3 List of PMC meiosis-related differentially expressed lncRNAs in the autotetraploid rice
DEL-PMC | Regulation | Targets | Annotation | Regulation | small RNAs precursors | Transposable elements | Reference |
|---|---|---|---|---|---|---|---|
TCONS_00026633 | down | LOC_Os08g01630 | DNA repair metallo-beta-lactamase, putative, expressed | down | Â | Class I and Class II | Wu et al. [11] |
TCONS_00049558 | down | LOC_Os01g39630 | DNA repair protein Rad51, putative, expressed | down | TCONS_00049558(*) | Â | Kou et al. [36] (RAD51C) |
TCONS_00055980 | down | LOC_Os04g30790 | expressed protein | down | Â | Â | Dean et al. [43] (XRI1) |
down | LOC_Os11g12620 | receptor protein kinase CLAVATA1 precursor, putative, expressed | down | Â | Â | Hord et al. [42] (BAM1) | |
down | LOC_Os03g11540 | RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed | down | Â | Â | Wu et al. [11] | |
TCONS_00057811 | down | LOC_Os12g41350 | meiotic asynaptic mutant 1, putative, expressed | down | Â | Â | Sanchez-Moran et al. [44] (ASY1) |
down | LOC_Os12g41450 | F-box domain containing protein, expressed | down | Â | Â | Deveshwar et al. [33] | |
TCONS_00068868 | down | LOC_Os03g58600 | PAZ domain containing protein, putative, expressed | down | TCONS_00068868(*) | Class II | Nonomura et al. [37] (MEL1) |
down | LOC_Os03g12730 | receptor protein kinase CLAVATA1 precursor, putative, expressed | down | Class II | Hord et al. [42] (BAM1) | ||
down | LOC_Os12g34510 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | down | Class II | Sanchez-Moran et al. [44] (H2AX) | ||
TCONS_00091337 | down | LOC_Os01g60730 | RING-H2 finger protein, putative, expressed | down | Â | Class I and Class II | Wu et al. [11] |
TCONS_00121645 | down | LOC_Os02g57760 | O-methyltransferase, putative, expressed | down | TCONS_00121645(*) | Class I and Class II | Fujita et al. [32] |
TCONS_00121884 | down | LOC_Os12g34510 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | down | TCONS_00121884(*) | Class I and Class II | Sanchez-Moran et al. [44] (H2AX) |
TCONS_00130461 | down | LOC_Os05g14590 | MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed | down | TCONS_00130461(*) | Class I and Class II | Wu et al. [11] |
TCONS_00131142 | down | LOC_Os01g68870 | leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed | down | TCONS_00131142 | Class II | Nonomura et al. [38] (OsMSP1) |
down | LOC_Os02g57270 | MYB family transcription factor, putative, expressed | down | Class II | Hong et al. [39] (OsTBP1) | ||
down | LOC_Os08g16610 | Rad21/Rec8 like protein, putative, expressed | down | Class II | Tao et al. [40] (OsRad21–3) | ||
down | LOC_Os12g31370 | DNA repair protein Rad51, putative, expressed | down | Class II | Morozumi et al. [41] (RAD51A2) | ||
TCONS_00136741 | down | LOC_Os04g43300 | BRCA1 C Terminus domain containing protein, expressed | down | Â | Class II | Wu et al. [11] |