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Table 3 List of PMC meiosis-related differentially expressed lncRNAs in the autotetraploid rice

From: Global identification and analysis revealed differentially expressed lncRNAs associated with meiosis and low fertility in autotetraploid rice

DEL-PMC Regulation Targets Annotation Regulation small RNAs precursors Transposable elements Reference
TCONS_00026633 down LOC_Os08g01630 DNA repair metallo-beta-lactamase, putative, expressed down   Class I and Class II Wu et al. [11]
TCONS_00049558 down LOC_Os01g39630 DNA repair protein Rad51, putative, expressed down TCONS_00049558(*)   Kou et al. [36] (RAD51C)
TCONS_00055980 down LOC_Os04g30790 expressed protein down    Dean et al. [43] (XRI1)
down LOC_Os11g12620 receptor protein kinase CLAVATA1 precursor, putative, expressed down    Hord et al. [42] (BAM1)
down LOC_Os03g11540 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed down    Wu et al. [11]
TCONS_00057811 down LOC_Os12g41350 meiotic asynaptic mutant 1, putative, expressed down    Sanchez-Moran et al. [44] (ASY1)
down LOC_Os12g41450 F-box domain containing protein, expressed down    Deveshwar et al. [33]
TCONS_00068868 down LOC_Os03g58600 PAZ domain containing protein, putative, expressed down TCONS_00068868(*) Class II Nonomura et al. [37] (MEL1)
down LOC_Os03g12730 receptor protein kinase CLAVATA1 precursor, putative, expressed down Class II Hord et al. [42] (BAM1)
down LOC_Os12g34510 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed down Class II Sanchez-Moran et al. [44] (H2AX)
TCONS_00091337 down LOC_Os01g60730 RING-H2 finger protein, putative, expressed down   Class I and Class II Wu et al. [11]
TCONS_00121645 down LOC_Os02g57760 O-methyltransferase, putative, expressed down TCONS_00121645(*) Class I and Class II Fujita et al. [32]
TCONS_00121884 down LOC_Os12g34510 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed down TCONS_00121884(*) Class I and Class II Sanchez-Moran et al. [44] (H2AX)
TCONS_00130461 down LOC_Os05g14590 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed down TCONS_00130461(*) Class I and Class II Wu et al. [11]
TCONS_00131142 down LOC_Os01g68870 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed down TCONS_00131142 Class II Nonomura et al. [38] (OsMSP1)
down LOC_Os02g57270 MYB family transcription factor, putative, expressed down Class II Hong et al. [39] (OsTBP1)
down LOC_Os08g16610 Rad21/Rec8 like protein, putative, expressed down Class II Tao et al. [40] (OsRad21–3)
down LOC_Os12g31370 DNA repair protein Rad51, putative, expressed down Class II Morozumi et al. [41] (RAD51A2)
TCONS_00136741 down LOC_Os04g43300 BRCA1 C Terminus domain containing protein, expressed down   Class II Wu et al. [11]
  1. Down: down-regulated in autotetraploid rice
  2. Small RNAs precursors: DEL serves as miRNAs/phasiRNAs precursors
  3. Class I: Retrotransposons; Class II: DNA Transposons
  4. (*): the small RNAs showed differential expression in autotetraploid rice