Table 2 Distribution of the transposable elements (TEs)-related differentially expressed lncRNAs (DEL) in autotetraploid rice
Transposable elements | Family | Anther | Ovary | ||
|---|---|---|---|---|---|
Down | up | Down | up | ||
DNA Transposons | Helitron | 50 | 4 | 8 | 1 |
Harbinger | 49 | 6 | 3 | 0 | |
Stowaway | 47 | 1 | 8 | 4 | |
MULE-MuDR | 38 | 11 | 2 | 1 | |
hAT | 30 | 1 | 6 | 1 | |
DNA-other | 26 | 1 | 2 | 0 | |
EnSpm | 26 | 70 | 4 | 0 | |
Retrotransposons | SINE | 8 | 3 | 1 | 1 |
LINE | 12 | 0 | 1 | 0 | |
LTR-other | 5 | 0 | 0 | 0 | |
Copia | 6 | 10 | 0 | 0 | |
Gypsy | 20 | 75 | 4 | 3 | |