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Table 1 Differentially expressed genes in dsc1–1 and wrky19–1 at 7 days post inoculation with M. incognita

From: The TIR-NB-LRR pair DSC1 and WRKY19 contributes to basal immunity of Arabidopsis to the root-knot nematode Meloidogyne incognita

Gene ID

Significance

Relative expression

Gene description

WRKY domain in promotor

Associated with

Regulated in dsc1–1

 AT4G12010

10.71

−2.50

Dominant suppressor of CAMTA3 1 (DSC1)

N

Biotic stress response [28]

 AT1G28040

7.55

−0.07

Ring/U-box superfamily protein

–

Putative ubiquitin ligase

 AT2G38380

7.08

−0.12

Peroxidase superfamily protein

Y

Abiotic stress response [30]

 AT4G16745

6.62

−0.29

Exostosin family protein

N

Pollen germination [31]

 AT1G70360

6.54

− 0.05

F-box family protein

N

Putative ubiquitin ligase

 AT5G57655

6.50

0.08

Xylose isomerase family protein

N

Recovery from abiotic stress [32]

 AT3G52970

5.21

−0.36

Cytochrome P450, family 76, subfamily G, polypeptide 1

Y

 

 AT5G06905

4.46

−0.44

Cytochrome P450, family 93, subfamily D peptide 1

Y

Putative oxygen-binding activity

 AT4G29690

4.41

−0.56

Alkaline-phosphatase-like family protein

Y

Hormone signaling and responses [33]

 AT1G68040

4.22

−0.35

S-adenosyl-L-methionine-dependent methyltransferase superfamily protein

N

Defense [34]

 AT5G06900

4.21

− 0.44

Cytochrome P450, family 712, subfamily A polypeptide 2

Y

Putative oxygen-binding activity

 AT1G56280

3.72

0.32

drought-induced 19 (Di19)

N

Abiotic stress response [35]

Regulated in wrky19–1

 AT2G38330

9.00

0.18

Mate Efflux family protein

Y

Biotic stress response [36]

 AT5G51860

8.53

0.09

K-box and MADS box transcription factor family protein (AGL72)

Y

Cell differentiation [37]

 AT5G45380

8.41

−0.09

DEGRADATION OF UREA 3 (DUR3)

Y

Urea uptake [38]

 AT1G34320

8.11

− 0.18

PSK SIMULATOR 1 (PSI1)

Y

Cell growth [39]

 AT5G14470

7.96

−0.19

Galactokinase 2 (GALK2)

Y

Abiotic stress response [40]

 AT1G64790

2.84

1.19

ILITHYIA (ILA)

Y

Biotic stress [41]

 AT1G66870

2.80

0.62

Carbohydrate-binding X8 domain superfamily protein

Y

 

 AT3G48740

2.71

0.57

Sugars Will Eventually be Exported Transporter 11 (SWEET11)

Y

Biotic stress [42]

 AT3G27940

3.13

0.54

LOB domain containing protein 26 (LBD26)

Y

Leaf development [43]

 AT5G23660

2.77

0.53

Sugars Will Eventually be Exported Transporter 12 (SWEET 12)

N

Biotic stress [42]

 AT4G26010

3.68

−0.73

Peroxidase super family protein

Y

Abiotic stress [44]

 AT5G38910

3.34

−0.74

RmLC-like cupins superfamily protein

Y

Abiotic stress response [45]

 AT3G47340

3.28

− 0.71

glutamine-dependent asparagine synthase 1 (ASN1)

Y

Metabolic pathways [46]

 AT5G08250

3.09

−0.76

Cytochrome P450 superfamily protein

N

 

 At1G34510

3.09

−0.66

Peroxidase superfamily protein

Y

Wound response [47]

  1. Gene expression of dsc1–1 and wrky19–1 is compared to Col-0. For each gene the level of significance and relative expression is stated, and the presence of a WRKY domain in the promotor region. The genes regulated in dsc1–1 are ranked based on significance, whereas genes regulated in wrky19–1 are presented in the following order: first the 5 most significant genes followed by the 5 genes most up-regulated and next, the 5 genes which are most down-regulated