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Table 3 Identification of SNP candidates in DEG genes, indicating position and change into de transcript

From: Molecular bases for drought tolerance in common vetch: designing new molecular breeding tools

ID Transcript

ID SNP1

Position

Change

ID SNP2

Position

Change

ID SNP3

Position

Change

p-value

Description

Transcript_0322

SNP_0118

375

A > G (3’U)

SNP_0119

555

T > A (S)

SNP_0120

590

T > C (MS)

8.76807E-06

Bax inhibitor-1 family protein

Transcript_0328

SNP_0121

115

T > A (3’U)

SNP_0124

391

G > A (S)

   

1.25871E-08

Ribosomal protein L27

Transcript_0419

SNP_0156

559

A > G (S)

SNP_0157

586

T > C (MS)

   

1.14691E-06

Photosystem II reaction Center PSB29

Transcript_0702

SNP_0261

791

A > G (3’U)

      

8.64592E-06

alpha/beta-Hydrolases superfamily protein

Transcript_0989

SNP_0352

175

A > T (S)

      

8.9403E-06

Cu + −exporting ATPase

Transcript_4678

SNP_1069

413

A > G (S)

SNP_1070

332

C > G (S)

   

2.87933E-07

copper-transporting ATPase RAN1 isoform X2

Transcript_6171

SNP_1231

368

C > T (S)

SNP_1232

418

T > A (MS)

SNP_1233

540

C > G (MS)

2.31921E-06

E3 ubiquitin-protein ligase TRIP12

Transcript_8874

SNP_1459

717

C > T (S)

SNP_1460

520

T > C (MS)

   

1.48291E-06

Pleckstrin homology (PH) domain superfamily protein

Transcript_9613

SNP_1480

590

G > C(MS)

SNP_1481

674

T > C(MS)

SNP_1482

702

A > C(NS)

2.15232E-08

Ribosomal L38e protein family

Transcript_10054

SNP_1541

769

T > A(3’U)

SNP_1542

188

C > T(3’U)

   

6.32482E-06

26S protease regulatory subunit 6B

Transcript_10860

SNP_1609

242

A > G(MS)

      

3.71096E-06

Pentatricopeptide repeat (PPR) superfamily protein

Transcript_11543

SNP_1624

161

C > T(MS)

      

6.05323E-07

fructose-bisphosphate aldolase 1

Transcript_11804

SNP_1729

989

A > G (S)

SNP_1730

195

G > A(S)

   

7.03222E-06

Actin-11 related

Transcript_15438

SNP_2477

626

A > G(S)

      

1.51852E-06

pleckstrin homologue 1

Transcript_20917

SNP_3006

716

T > C (MS)

SNP_3007

725

T > A(MS)

   

8.86323E-07

Lipase_3

Transcript_20941

SNP_3015

250

T > G (MS)

SNP_3016

704

G > A (S)

   

2.19552E-06

GTP-binding protein involved in stress response

Transcript_21213

SNP_3100

169

C > G (S)

      

6.76584E-06

Signal recognition particle, alpha subunit

Transcript_21241

SNP_3115

481

C > A (3’U)

SNP_3116

484

A > G (S)

   

1.36926E-06

manganese superoxide dismutase 1

Transcript_21548

SNP_3225

411

T > C(S)

      

6.94317E-06

DNA-binding enhancer protein-like protein

Transcript_21929

SNP_3368

352

A > T(S)

      

2.96764E-06

p450

Transcript_29618

SNP_4470

85

A > G(MS)

      

5.26296E-06

mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1

Transcript_43164

SNP_5625

528

C > T(S)

      

7.99581E-07

SOUL heme-binding family protein [

Transcript_43425

SNP_5679

292

C > T(3’U)

SNP_5680

297

A > G(3’U)

   

5.15776E-08

ATPase, V1 complex, subunit B protein

Transcript_44989

SNP_5866

524

T > G (MS)

      

3.94602E-06

ATP-dependent Clp protease ATP-binding subunit

Transcript_48019

SNP_5992

338

A > G(S)

      

2.25642E-06

Transcription Factor HAT9; Homeobox-leucine zipper protein

Transcript_50340

SNP_6030

56

G > A(S)

      

8.21592E-06

photosystem I subunit XI

Transcript_50427

SNP_6051

697

A > G(S)

      

3.34132E-07

Lipase_3

Transcript_50487

SNP_6054

292

A > G(S)

SNP_6055

322

G > A(S)

SNP_6056

364

G > A(MS)

3.6413E-06

Glycolytic

Transcript_50526

SNP_6062

285

G > A(MS)

SNP_6063

318

G > A(MS)

   

9.15844E-06

Acyl transferase/lysophospholipase superfamily protein

Transcript_50907

SNP_6132

245

A > G(S)

SNP_6133

254

G > A(S)

SNP_6134

317

G > A(S)

5.88456E-06

ADP/ATP carrier 2

Transcript_51136

SNP_6181

431

C > G(MS)

      

8.48917E-06

membrane-associated progesterone receptor component

Transcript_55265

SNP_6483

519

A > G(S)

SNP_6484

553

G > A(MS)

   

7.86331E-06

Ribosomal_L27

Transcript_55491

SNP_6528

363

C > A(S)

      

1.04189E-06

enolase

Transcript_55845

SNP_6592

293

C > T(MS)

      

2.53713E-06

Yellow Stripe like 6

Transcript_55919

SNP_6606

744

A > C(S)

SNP_6607

747

A > C(S)

   

3.37812E-07

Annexin;response to water deprivation,

Transcript_61815

SNP_7139

371

G > A(S)

      

8.63893E-08

lipoxygenase

  1. Note: Parenthesis in Change Column indicates 3′-UTR regions (3’U), silent mutations (S), missense mutation (MS) and nonsense mutation (NS). Note the presence of more than one SNPs in some transcripts