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Table 3 Identification of SNP candidates in DEG genes, indicating position and change into de transcript

From: Molecular bases for drought tolerance in common vetch: designing new molecular breeding tools

ID Transcript ID SNP1 Position Change ID SNP2 Position Change ID SNP3 Position Change p-value Description
Transcript_0322 SNP_0118 375 A > G (3’U) SNP_0119 555 T > A (S) SNP_0120 590 T > C (MS) 8.76807E-06 Bax inhibitor-1 family protein
Transcript_0328 SNP_0121 115 T > A (3’U) SNP_0124 391 G > A (S)     1.25871E-08 Ribosomal protein L27
Transcript_0419 SNP_0156 559 A > G (S) SNP_0157 586 T > C (MS)     1.14691E-06 Photosystem II reaction Center PSB29
Transcript_0702 SNP_0261 791 A > G (3’U)        8.64592E-06 alpha/beta-Hydrolases superfamily protein
Transcript_0989 SNP_0352 175 A > T (S)        8.9403E-06 Cu + −exporting ATPase
Transcript_4678 SNP_1069 413 A > G (S) SNP_1070 332 C > G (S)     2.87933E-07 copper-transporting ATPase RAN1 isoform X2
Transcript_6171 SNP_1231 368 C > T (S) SNP_1232 418 T > A (MS) SNP_1233 540 C > G (MS) 2.31921E-06 E3 ubiquitin-protein ligase TRIP12
Transcript_8874 SNP_1459 717 C > T (S) SNP_1460 520 T > C (MS)     1.48291E-06 Pleckstrin homology (PH) domain superfamily protein
Transcript_9613 SNP_1480 590 G > C(MS) SNP_1481 674 T > C(MS) SNP_1482 702 A > C(NS) 2.15232E-08 Ribosomal L38e protein family
Transcript_10054 SNP_1541 769 T > A(3’U) SNP_1542 188 C > T(3’U)     6.32482E-06 26S protease regulatory subunit 6B
Transcript_10860 SNP_1609 242 A > G(MS)        3.71096E-06 Pentatricopeptide repeat (PPR) superfamily protein
Transcript_11543 SNP_1624 161 C > T(MS)        6.05323E-07 fructose-bisphosphate aldolase 1
Transcript_11804 SNP_1729 989 A > G (S) SNP_1730 195 G > A(S)     7.03222E-06 Actin-11 related
Transcript_15438 SNP_2477 626 A > G(S)        1.51852E-06 pleckstrin homologue 1
Transcript_20917 SNP_3006 716 T > C (MS) SNP_3007 725 T > A(MS)     8.86323E-07 Lipase_3
Transcript_20941 SNP_3015 250 T > G (MS) SNP_3016 704 G > A (S)     2.19552E-06 GTP-binding protein involved in stress response
Transcript_21213 SNP_3100 169 C > G (S)        6.76584E-06 Signal recognition particle, alpha subunit
Transcript_21241 SNP_3115 481 C > A (3’U) SNP_3116 484 A > G (S)     1.36926E-06 manganese superoxide dismutase 1
Transcript_21548 SNP_3225 411 T > C(S)        6.94317E-06 DNA-binding enhancer protein-like protein
Transcript_21929 SNP_3368 352 A > T(S)        2.96764E-06 p450
Transcript_29618 SNP_4470 85 A > G(MS)        5.26296E-06 mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1
Transcript_43164 SNP_5625 528 C > T(S)        7.99581E-07 SOUL heme-binding family protein [
Transcript_43425 SNP_5679 292 C > T(3’U) SNP_5680 297 A > G(3’U)     5.15776E-08 ATPase, V1 complex, subunit B protein
Transcript_44989 SNP_5866 524 T > G (MS)        3.94602E-06 ATP-dependent Clp protease ATP-binding subunit
Transcript_48019 SNP_5992 338 A > G(S)        2.25642E-06 Transcription Factor HAT9; Homeobox-leucine zipper protein
Transcript_50340 SNP_6030 56 G > A(S)        8.21592E-06 photosystem I subunit XI
Transcript_50427 SNP_6051 697 A > G(S)        3.34132E-07 Lipase_3
Transcript_50487 SNP_6054 292 A > G(S) SNP_6055 322 G > A(S) SNP_6056 364 G > A(MS) 3.6413E-06 Glycolytic
Transcript_50526 SNP_6062 285 G > A(MS) SNP_6063 318 G > A(MS)     9.15844E-06 Acyl transferase/lysophospholipase superfamily protein
Transcript_50907 SNP_6132 245 A > G(S) SNP_6133 254 G > A(S) SNP_6134 317 G > A(S) 5.88456E-06 ADP/ATP carrier 2
Transcript_51136 SNP_6181 431 C > G(MS)        8.48917E-06 membrane-associated progesterone receptor component
Transcript_55265 SNP_6483 519 A > G(S) SNP_6484 553 G > A(MS)     7.86331E-06 Ribosomal_L27
Transcript_55491 SNP_6528 363 C > A(S)        1.04189E-06 enolase
Transcript_55845 SNP_6592 293 C > T(MS)        2.53713E-06 Yellow Stripe like 6
Transcript_55919 SNP_6606 744 A > C(S) SNP_6607 747 A > C(S)     3.37812E-07 Annexin;response to water deprivation,
Transcript_61815 SNP_7139 371 G > A(S)        8.63893E-08 lipoxygenase
  1. Note: Parenthesis in Change Column indicates 3′-UTR regions (3’U), silent mutations (S), missense mutation (MS) and nonsense mutation (NS). Note the presence of more than one SNPs in some transcripts