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Table 3 Differentially abundant proteins involved in proteins metabolism

From: Comparative proteomic analysis reveals that exogenous 6-benzyladenine (6-BA) improves the defense system activity of waterlogged summer maize

Protein accession

Protein description

Score

Coverage [%]

Peptides

PSMs

Unique peptides

V3–6/CK Ratio

V3–6/CK P value

V3–6-B/CK Ratio

V3–6-B/CK

P value

V3–6-B/V3–6 Ratio

V3–6-B/V3–6

P value

A0A1D6E942

30S ribosomal protein 3 chloroplastic OS = Zea mays GN = ZEAMMB73_Zm00001d003411

19

16

3

6

3

1.51

5.8E-05

0.86

0.0026

0.57

0.00000432

A0A1D6ES19

Heat shock protein 90–2 OS = Zea mays GN = ZEAMMB73_Zm00001d006008

16

36.4

21

27

2

1.63

0.00058

0.98

0.765

0.60

0.000603

A0A1D6GG02

DnaJ protein OS = Zea mays GN = ZEAMMB73_Zm00001d013111

12

30.7

12

17

2

1.13

0.0477

0.71

0.00432

0.63

0.00202

A0A1D6GK64

Heat shock 70 kDa protein 6 chloroplastic OS = Zea mays GN = ZEAMMB73_Zm00001d013507

44

51.2

36

125

2

1.17

0.0416

0.72

0.0186

0.62

0.00404

A0A1D6GTD7

26S proteasome non-ATPase regulatory subunit 13 homolog A OS = Zea mays GN = ZEAMMB73_Zm00001d014436

49

20.9

6

6

3

1.51

0.0122

1.02

0.895

0.67

0.0311

A0A1D6GWT5

Calcium-binding EF hand family protein OS = Zea mays GN = ZEAMMB73_Zm00001d014862

16

1.7

2

2

2

1.31

0.0191

0.85

0.0303

0.65

0.00178

A0A1D6GZM9

RING/FYVE/PHD zinc finger superfamily protein OS = Zea mays GN = ZEAMMB73_Zm00001d015152

6

10.8

1

1

1

2.35

0.00596

0.63

0.00938

0.27

0.00328

A0A1D6GZY9

Cleavage and polyadenylation specificity factor (CPSF) A subunit protein OS = Zea mays GN = ZEAMMB73_Zm00001d015208

65

5.6

7

9

7

1.43

0.00056

0.82

0.0192

0.57

0.00026

A0A1D6H4K9

Nucleic acid-binding OB-fold-like protein OS = Zea mays GN = ZEAMMB73_Zm00001d015917

16

16.2

2

2

2

1.57

1.8E-05

1.10

0.0534

0.71

0.000604

A0A1D6H5B6

50S ribosomal protein L21 chloroplastic OS = Zea mays GN = ZEAMMB73_Zm00001d016072

49

34

4

7

4

1.60

0.00016

0.82

0.0385

0.51

0.000382

A0A1D6HCE3

26S proteasome non-ATPase regulatory subunit 6-like protein OS = Zea mays GN = ZEAMMB73_Zm00001d017117

36

11.4

4

7

2

1.80

1.8E-06

0.93

0.182

0.52

0.000125

A0A1D6HG23

Uncharacterized protein OS = Zea mays GN = ZEAMMB73_Zm00001d017621

61

25.5

4

10

4

1.24

0.00136

0.73

0.00000299

0.59

0.0000366

A0A1D6HT76

Protein containing PDZ domain a K-box domain and a TPR region OS = Zea mays GN = ZEAMMB73_Zm00001d018901

159

37.6

9

21

9

1.62

1.1E-06

0.65

0.000341

0.40

0.00164

A0A1D6II13

Calcium-dependent lipid-binding (CaLB domain) family protein OS = Zea mays GN = ZEAMMB73_Zm00001d021952

27

6.5

2

2

1

1.22

0.0366

0.80

0.0167

0.66

0.00254

A0A1D6JX93

Peroxisomal nicotinamide adenine dinucleotide carrier OS = Zea mays GN = ZEAMMB73_Zm00001d028542

32

14.6

4

5

4

1.59

0.00092

1.00

0.976

0.63

0.000185

A0A1D6KA58

26S proteasome non-ATPase regulatory subunit 13 homolog A OS = Zea mays GN = ZEAMMB73_Zm00001d030126

24

15.6

5

5

2

1.52

7.5E-05

1.23

0.00482

0.81

0.00676

A0A1D6KE00

Thaumatin-like protein OS = Zea mays GN = ZEAMMB73_Zm00001d030694

204

21.5

18

25

9

1.29

0.00458

0.80

0.157

0.62

0.0219

A0A1D6KJP4

Peptidylprolyl isomerase OS = Zea mays GN = ZEAMMB73_Zm00001d031569

124

27.6

13

16

13

1.48

9.2E-07

0.82

0.00128

0.55

0.0000189

A0A1D6KSJ1

Putative prefoldin subunit 5 OS = Zea mays GN = ZEAMMB73_Zm00001d032649

10

13.8

1

1

1

1.65

0.00494

1.06

0.598

0.64

0.00206

A0A1D6L6U7

NmrA-like negative transcriptional regulator family protein OS = Zea mays GN = ZEAMMB73_Zm00001d034357

23

9.2

2

2

2

0.48

2.5E-08

0.53

0.0111

1.12

0.248

A0A1D6LBS9

Protein prenylyltransferase superfamily protein OS = Zea mays GN = ZEAMMB73_Zm00001d034833

17

11.2

2

3

2

1.45

0.00226

0.68

0.0489

0.47

0.00486

A0A1D6LIX0

Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain OS = Zea mays GN = ZEAMMB73_Zm00001d035817

59

8.1

8

9

6

1.33

0.00606

0.82

0.0307

0.62

0.0012

A0A1D6M323

Ribosomal protein OS = Zea mays GN = ZEAMMB73_Zm00001d038084

236

42.3

15

35

14

2.01

1.7E-07

0.69

0.0059

0.34

0.00000192

A0A1D6MBB0

Nucleosome assembly protein 1 OS = Zea mays GN = ZEAMMB73_Zm00001d038851

25

7.5

2

3

1

1.89

2.9E-07

0.90

0.205

0.48

0.00578

A0A1D6MDC0

Protein SUPPRESSOR OF PHYA-105 1 OS = Zea mays GN = ZEAMMB73_Zm00001d039072

-2

0.7

1

1

1

1.40

0.224

0.82

0.553

0.59

0.0255

A0A1D6MUF1

Heat shock 70 kDa protein 6 chloroplastic OS = Zea mays GN = ZEAMMB73_Zm00001d041119

323

55

35

98

7

1.08

0.0124

0.69

0.0000396

0.64

0.0000363

A0A1D6MWV7

Importin subunit beta-1 OS = Zea mays GN = ZEAMMB73_Zm00001d041556

23

15.8

10

14

2

1.45

0.0107

0.78

0.0136

0.54

0.00206

A0A1D6NQK6

SMAD/FHA domain-containing protein OS = Zea mays GN = ZEAMMB73_Zm00001d044666

80

17.9

3

4

3

1.33

0.00962

0.73

0.00666

0.55

0.000518

A0A1D6PIZ9

Tubulin-tyrosine ligase OS = Zea mays GN = ZEAMMB73_Zm00001d048282

30

5.1

4

5

4

1.02

0.853

0.68

0.0255

0.66

0.0168

A0A1D6QK75

Heat shock protein 90–5 chloroplastic OS = Zea mays GN = ZEAMMB73_Zm00001d052809

34

11.9

8

10

3

1.40

0.0166

0.83

0.13

0.59

0.00038

B4F8Q2

Uncharacterized protein OS = Zea mays

42

40.6

25

55

2

1.28

0.00678

0.62

0.00126

0.48

0.00038

B4FCK9

60S ribosomal protein L22–2 OS = Zea mays GN = ZEAMMB73_Zm00001d022463

57

46.9

5

8

4

1.62

0.00148

0.89

0.196

0.55

0.000221

B4FI21

ARM repeat superfamily protein OS = Zea mays GN = ZEAMMB73_Zm00001d053003

161

36.5

13

17

3

1.10

0.1

0.64

0.000498

0.58

0.000156

B4FKB3

50S ribosomal protein L31 OS = Zea mays GN = ZEAMMB73_Zm00001d044130

10

8.5

1

5

1

1.43

0.00054

0.78

0.00418

0.55

0.0000366

B4FNC9

Small ubiquitin-related modifier OS = Zea mays GN=SUMO1a

77

48.5

6

9

6

1.30

0.00172

0.74

0.00122

0.57

0.000018

B4FNT1

Elongation factor 1-beta OS = Zea mays GN = ZEAMMB73_Zm00001d022134

48

22.3

4

7

4

1.65

0.00034

0.96

0.378

0.58

0.000083

B4FT63

Genomes uncoupled4-like protein OS = Zea mays GN = ZEAMMB73_Zm00001d023427

13

7.4

2

2

2

1.52

4E-06

0.69

0.0212

0.45

0.000141

B4FT80

Nucleic acid-binding OB-fold-like protein OS = Zea mays GN = ZEAMMB73_Zm00001d045607

8

8.4

1

1

1

1.60

0.00168

0.79

0.083

0.49

0.0028

B4FUA8

Calreticulin-3 OS = Zea mays GN = ZEAMMB73_Zm00001d012170

85

30.6

11

15

10

1.21

0.00336

0.68

0.0000216

0.56

0.0000245

B4FUZ5

30S ribosomal protein S1 OS = Zea mays GN = ZEAMMB73_Zm00001d047581

72

26.4

8

13

8

1.57

1.7E-05

1.00

0.919

0.64

0.000465

B4FVI4

60S acidic ribosomal protein P2–5 OS = Zea mays GN = ZEAMMB73_Zm00001d026578

8

9

1

1

1

2.14

0.00022

1.38

0.000382

0.65

0.00128

B6SLK4

Elongation factor 1-beta OS = Zea mays GN = ZEAMMB73_Zm00001d022513

100

38.8

8

18

8

2.01

1.9E-07

0.65

0.000197

0.32

0.00000202

B6T9G1

26S proteasome non-ATPase regulatory subunit 6 OS = Zea mays GN = ZEAMMB73_Zm00001d003257

24

8.8

3

3

1

1.71

0.00012

0.80

0.00512

0.47

0.0000153

B6TBM1

Alpha-soluble NSF attachment protein OS = Zea mays GN = ZEAMMB73_Zm00001d049982

119

39.1

9

10

9

1.41

0.00308

0.78

0.000221

0.55

0.000385

B6TDB5

17.4 kDa class I heat shock protein 3 OS = Zea mays GN = ZEAMMB73_Zm00001d028555

33

18.4

3

5

3

0.56

4.2E-06

0.64

0.00132

1.14

0.0887

B6TRV8

ARM repeat superfamily protein OS = Zea mays GN = ZEAMMB73_Zm00001d004676

13

28.5

11

15

1

1.15

0.0159

0.70

0.000737

0.61

0.000198

B6TT66

Ribosome-like protein OS = Zea mays GN = ZEAMMB73_Zm00001d015628

41

28.1

4

6

3

1.39

0.0119

0.88

0.203

0.64

0.00216

B6U284

14–3-3-like protein OS = Zea mays GN = ZEAMMB73_Zm00001d050375

48

43

10

13

3

1.84

0.00022

1.03

0.611

0.56

0.00082

B6U581

Ribosome-like protein OS = Zea mays GN = ZEAMMB73_Zm00001d053713

57

42.4

6

10

5

1.35

0.00298

0.78

0.00218

0.58

0.00046

B6UG10

40S ribosomal protein S3a OS = Zea mays GN = ZEAMMB73_Zm00001d048157

85

35.8

10

18

10

1.34

0.0001

0.76

0.000324

0.57

0.0000355

B6UIC1

50S ribosomal protein L12–1 OS = Zea mays GN = ZEAMMB73_Zm00001d043972

181

56.3

10

43

3

1.33

0.00082

0.82

0.00558

0.62

0.0000351

C0HF19

Nucleosome assembly protein 1 OS = Zea mays GN = ZEAMMB73_Zm00001d045352

7

10

2

2

1

1.72

4.2E-05

0.84

0.0165

0.49

0.000622

C0P531

26S proteasome non-ATPase regulatory subunit 3 homolog A OS = Zea mays GN = ZEAMMB73_Zm00001d053232

96

21.8

9

10

9

1.21

0.0251

0.72

0.00000138

0.60

0.0000803

C0PDG3

Heat shock protein 90–6 mitochondrial OS = Zea mays GN = ZEAMMB73_Zm00001d041719

162

20.8

13

16

8

1.45

0.00086

0.73

0.0189

0.51

0.0016

C4JBB8

Heat shock 70 kDa protein 9 mitochondrial OS = Zea mays GN = ZEAMMB73_Zm00001d006036

64

22.3

14

19

9

1.22

0.00146

0.62

0.00000132

0.51

0.0000168

K7TTX0

Plant UBX domain-containing protein 4 OS = Zea mays GN = ZEAMMB73_Zm00001d025628

31

11.8

3

4

1

1.11

0.666

0.63

0.00688

0.57

0.0355

K7U5A5

14–3-3-like protein OS = Zea mays GN = ZEAMMB73_Zm00001d053090

193

59.7

16

22

11

1.42

0.00012

0.87

0.0101

0.61

0.0000389

K7VEB9

Importin subunit alpha OS = Zea mays GN = ZEAMMB73_Zm00001d009850

29

37.8

14

22

2

1.41

0.0209

0.93

0.452

0.66

0.0037

O24415

60S acidic ribosomal protein P2B OS = Zea mays GN = RPP2B

7

10.6

1

2

1

1.37

0.00026

0.90

0.00862

0.65

0.0000431

O64960

23.6 kDa heat shock protein mitochondrial OS = Zea mays GN = hsp22

18

9.2

2

2

2

0.65

0.00094

0.63

0.00222

0.98

0.719

P24631

17.5 kDa class II heat shock protein OS = Zea mays

43

30.4

3

4

3

0.52

4E-05

0.58

0.0000602

1.11

0.00508