Table 3 Regulation based identification of key transcription factors involved in cold response of Brassica napus

BnaC07g43590D

two-component response regulator ARR10

NULL

BnaC07g07840D

transcription factor bHLH77

GO:0015979 photosynthesis

GO:0019684 photosynthesis, light reaction

GO:0009186 deoxyribonucleoside diphosphate metabolic process

BnaC01g10420D

transcription factor MYC4

NULL

BnaAnng03730D

ethylene-responsive transcription factor ERF011

GO:1901606 alpha-amino acid catabolic process

GO:0006544 glycine metabolic process

GO:1901565 organonitrogen compound catabolic process

BnaA05g04450D

ethylene-responsive transcription factor ERF034

NULL

BnaA03g19970D

transcription factor PIF4-like

GO:0015979 photosynthesis

GO:0009853 photorespiration

GO:0015977 carbon fixation

BnaA09g37540D

transcription factor PIF5-like

GO:0009853 photorespiration

GO:0015977 carbon fixation

GO:0015979 photosynthesis

BnaA03g40080D

transcription factor PIF7

GO:0015979 photosynthesis

GO:0006091 generation of precursor metabolites and energy

GO:0019684 photosynthesis, light reaction

BnaA06g27900D

ethylene-responsive transcription factor TINY

NULL

BnaCnng16520D

transcription factor DIVARICATA

NULL

BnaC05g14070D

REVEILLE 7

GO:0000160 phosphorelay signal transduction system

GO:0050896 response to stimulus

GO:0007623 circadian rhythm

BnaA06g12480D

REVEILLE 7

GO:0043086 negative regulation of catalytic activity

GO:0010035 response to inorganic substance

GO:0009892 negative regulation of metabolic process

BnaA06g24950D

telomere repeat-binding factor 2

GO:0009845 seed germination

GO:0071103 DNA conformation change

GO:0006091 generation of precursor metabolites and energy

BnaC09g47560D

transcription factor TCP21

GO:0033014 tetrapyrrole biosynthetic process

GO:0046148 pigment biosynthetic process

GO:0033013 tetrapyrrole metabolic process

BnaA06g26010D

transcription factor TCP7-like

GO:0015995 chlorophyll biosynthetic process

GO:0018130 heterocycle biosynthetic process

GO:0019438 aromatic compound biosynthetic process

BnaC06g22430D

bZIP transcription factor 44

GO:0015979 photosynthesis

GO:0018298 protein-chromophore linkage

GO:0009773 photosynthetic electron transport in photosystem I

BnaC08g05600D

bZIP transcription factor 60

NULL

BnaC05g17700D

transcription factor TGA3

NULL

BnaA01g37250D

protein indeterminate-domain 11

GO:0016114 terpenoid biosynthetic process

GO:0006720 isoprenoid metabolic process

GO:0008610 lipid biosynthetic process

BnaA10g22560D

calmodulin-binding transcription activator 1

GO:0080022 primary root development

GO:0016052 carbohydrate catabolic process

GO:0009664 plant-type cell wall organization

BnaA07g24230D

cyclic dof factor 5

GO:0006355 regulation of transcription, DNA-templated

GO:0008643 carbohydrate transport

BnaAnng34260D

CBF-7

GO:0016998 cell wall macromolecule catabolic process

GO:0046348 amino sugar catabolic process

GO:0006040 amino sugar metabolic process

BnaC08g04820D

ethylene-responsive transcription factor RAP2–1

NULL

BnaC07g29370D

ethylene-responsive transcription factor SHINE 3

GO:0015979 photosynthesis

GO:0018298 protein-chromophore linkage

GO:0009817 defense response to fungus, incompatible interaction

BnaC07g13550D

NAC domain-containing protein 13

NULL