Table 2 Homology based identification of cold responsive transcription factors in Brassica napus
From: Genome-wide identification of cold responsive transcription factors in Brassica napus L
Gene in B. napus | Homolog in A. thaliana* | Symbol | Identity% | log2foldchange# | Description | Stress elements** | |
|---|---|---|---|---|---|---|---|
158A | SGDH284 | ||||||
BnaCnng41320D | AT3G19290 | ABF4 | 66.8 | 1.7 | 1.6 | Abscisic acid responsive elements-binding factor 4 | drought/NaCl/ABA/cold |
BnaA05g11360D | AT2G31380 | BBX25 | 88.7 | 2.7 | 1.6 | B-box zinc finger protein 25 | cold/light |
BnaCnng49280D | AT4G25490 | CBF1 | 65.6 | 5.2 | 7.2 | Dehydration-responsive element-binding protein 1B | cold/drought/salt |
BnaAnng34260D BnaC07g39680D BnaC03g71900D BnaA03g13620D | AT4G25470 | CBF2 | 78.2 74.2 76.5 77.0 | 2.4 3.2 4.3 2.4 | 2.7 3.4 4.4 6.9 | Dehydration-responsive element-binding protein 1C | cold/drought/salt |
BnaC04g31720D | AT5G39660 | CDF2 | 74.6 | 2.6 | 1.1 | Cyclic dof factor 2 | cold/drought/UV-B |
BnaA02g02840D BnaC09g41980D BnaA10g18420D | AT5G15850 | COL1 | 63.1 66.6 66.4 | 2.2 2.7 2.2 | 1.3 1.5 1.7 | Zinc finger protein CONSTANS-LIKE 1 | cold/ABA/drought/light/NaCl |
BnaC03g35440D | AT3G07650 | COL9 | 80.1 85.9 | 4.2 1.6 | 3.1 4.5 | Zinc finger protein CONSTANS-LIKE 9 | cold/NaCl |
BnaA05g29980D | |||||||
BnaC03g22460D | AT2G40140 | CZF1 | 75.6 | 5.0 | 2.2 | Zinc finger CCCH domain -containing protein | cold |
BnaC09g49920D | AT5G05410 | DREB2A | 64.7 | 1.8 | 2.9 | Dehydration-responsive element-binding protein 2A | cold/drought/salt |
BnaA10g25000D | 62.2 | 2.8 | 3.8 | ||||
BnaA05g05080D | AT3G61150 | HDG1 | 65.0 | 1.1 | 1.2 | Homeobox-leucine zipper protein HDG1 | cold |
BnaCnng44540D | AT3G24310 | MYB305 | 81.8 | 7.1 | 5.2 | MYB-like DNA-binding domain protein | cold/NaCl |
BnaA03g53110D | AT4G34990 | MYB32 | 75.4 | 1.4 | 2.3 | Transcription factor MYB32 | cold/NaCl |
BnaA01g16400D | AT4G27410 | NAC072 | 87.0 | 2.3 | 1.4 | NAC domain-containing protein 72 | cold/drought/NaCl/ABA/light |
BnaC08g04820D | AT1G46768 | RAP2–1 | 78.1 | 3.4 | 2.6 | Ethylene-responsive transcription factor RAP2–1 | cold |
BnaA05g25200D | AT3G14230 | RAP2–2 | 73.6 | 1.8 | 1.3 | Ethylene-responsive transcription factor RAP2–2 | cold |
BnaC05g39400D | 74.1 | 1.8 | 1.6 | ||||
BnaA03g33290D | 69.5 | 1.0 | 1.9 | ||||
BnaC03g08310D | AT5G17300 | RVE1 | 78.0 | 2.7 | 1.9 | Protein REVEILLE 1 | cold/drought/salt |
BnaA01g19870D | AT3G46600 | SCL30 | 80.4 | 1.6 | 1.5 | Scarecrow-like protein 30 | cold/drought/UV-B/iron |
BnaC01g24660D | 70.6 | 1.3 | 1.8 | ||||
BnaA05g11640D | AT2G31070 | TCP10 | 76.8 | 1.9 | 2.0 | Transcription factor TCP10 | cold |
BnaC07g43320D | AT4G31550 | WRKY11 | 72.0 | 1.5 | 1.1 | Probable WRKY transcription factor 11 | ABA/cold/light |
BnaA04g22040D | AT2G38470 | WRKY33 | 75.9 | 4.0 | 1.8 | Probable WRKY transcription factor 33 | cold/drought |
BnaC03g58080D | AT1G27730 | ZAT10 | 87.6 | 1.7 | 2.2 | Zinc finger protein ZAT10 | cold/drought/ABA/NaCl |
BnaC07g16940D | 61.8 | 7.1 | 3.6 | ||||
BnaA03g09250D | AT5G59820 | ZAT12 | 85.2 | 1.4 | 1.1 | Zinc finger protein ZAT12 | cold/drought |
BnaC09g35160D | 84.7 | 2.6 | 2.4 | ||||
BnaA10g12780D | 86.4 | 3.4 | 3.7 | ||||
BnaA10g25850D | AT5G04340 | ZAT6 | 76.0 | 2.3 | 3.7 | Zinc finger protein ZAT6 | cold |
BnaCnng20570D | 72.0 | 4.0 | 7.7 | ||||
BnaA03g54460D | AT4G39780 | ERF060 | 76.2 | −2.7 | −3.4 | Ethylene-responsive transcription factor ERF060 | cold |
BnaC07g46940D | 76.4 | −2.3 | −2.7 |  | |||
BnaA09g55520D | AT3G61890 | ATHB-12 | 78.9 | −2.1 | −2.0 | Homeobox-leucine zipper protein ATHB-12 | cold/drought/NaCl |
BnaA05g24390D | AT3G15210 | ERF4 | 72.7 | −1.2 | −2.2 | Ethylene-responsive transcription factor 4 | cold/drought |
BnaA06g01090D | 64.7 | −2.5 | − 2.0 | ||||
BnaC03g39000D | 77.3 | −1.4 | −1.9 | ||||
BnaA03g33790D | 76.4 | −1.2 | −1.8 | ||||
BnaC05g37390D | AT4G14540 | HAP3C | 85.1 | −2.0 | −2.6 | Transcriptional activator HAP3C | cold |
BnaC03g39380D | 85.3 | −2.3 | − 2.3 | ||||
BnaA03g33970D | 78.3 | −1.9 | −2.1 | ||||
BnaA01g28350D | 85.5 | −1.2 | − 1.6 | ||||
BnaC02g25060D | AT1G78600 | LZF1 | 83.7 | −2.2 | −2.1 | B-box zinc finger protein 22 | cold |
BnaC08g48630D | AT3G50060 | MYB77 | 72.1 | −1.4 | −1.0 | Transcription factor MYB77 | cold |
BnaA07g13990D | AT2G28550 | RAP2–7 | 80.9 | −1.7 | − 1.9 | Ethylene-responsive transcription factor RAP2–7 | cold/ABA/light |
BnaC04g15640D | 80.9 | −1.4 | −1.4 | ||||
BnaA06g07470D | AT1G13260 | RAV1 | 85.5 | −2.4 | −2.5 | Ethylene-responsive transcription factor RAV1 | cold/NaCl |
BnaAnng40580D BnaCnng37790D | 84.6 | −3.0 | −2.4 | ||||
84.9 | −1.4 | −1.7 | |||||
BnaA06g24950D | AT5G67580 | TRB2 | 79.4 | −1.1 | −1.3 | Telomere repeat-binding factor 2 | cold/NaCl/drought |