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Table 1 IDA-like gene families in species of the Solanaceae family (genome localization from different Sol Genomics Network databases [30]). All prepropeptides are predicted to be localized in the secretory pathway according to TargetP [31] and SignalP-5.0 [32]

From: Differential expression of IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)-like genes in Nicotiana benthamiana during corolla abscission, stem growth and water stress

Gene
name
Genome
localization
Prepropeptide length (aa)Predicted signal peptide length (aa)PIP
domain
NsylIDA1Nsyl_KD945166.1:74265..74582 forward10539PIPPSAPSKRHN
NsylIDA2Nsyl_KD978144.1:88678..88980 reverse10032PIPPSAPSKRHN
NsylIDA3Nsyl_KD951180.1:40337..40579 forward8032PIPPSAPSKRHN
NsylIDA4Nsyl_KD977536.1:13349..13576 forward7522PIPPSAPSQRHN
NsylIDA5Nsyl_KD962079.1:38313..38564 forward8330PIPASGPSRKHN
NtomIDA1Ntom_KB972926.1:26032..26325 forward9737PIPPSAPSKRHN
NtomIDA2Ntom_KB954314.1:53025..53614 forward9632PIPPSAPSKRHN
NtomIDA3Ntom_KB969023.1:33965..34204 forward7931PIPPSAPSKRHN
NtomIDA4Ntom_KB956501.1:19193..19405 reverse7022PIPPSAPSQRHN
NtomIDA5Ntom_KB958630.1:30910..31161 reverse8330PIPASGPSRKHN
NtabIDA1ANtab-BX_AWOK-SS18147:707412..707735 reverse10748PIPPSAPSKRHN
NtabIDA1BNtab-BX_AWOK-SS9960:271769..272062 forward9737PIPPSAPSKRHN
NtabIDA2ANtab-BX_AWOK-SS12153:24919..25221 reverse10032PIPPSAPSKRHN
NtabIDA2BNtab-BX_AWOK-SS20685:67080..68370 reverse9632PIPPSAPSKRHN
NtabIDA3ANtab-BX_AWOK-SS473:166199..166441 reverse8032PIPPSAPSKRHN
NtabIDA3BNtab-BX_AWOK-SS2799:946688..946927 forward7931PIPPSAPSKRHN
NtabIDA4ANtab-BX_AWOK-SS18001:26098..26325 forward7522PIPPSAPSQRHN
NtabIDA4BNtab-BX_AWOK-SS12176:491822..492033 reverse7022PIPPSAPSQRHN
NtabIDA5ANtab-BX_AWOK-SS18104:315608..315859 reverse8330PIPASGPSRKHN
NtabIDA5BNtab-BX_AWOK-SS9524:125323..125574 forward8330PIPASGPSRKHN
NbenIDA1ANiben101Scf00570:62104..62373 reverse9036PIPPSAPSK-----
NbenIDA1BNiben101Scf01338:640730..641035 forward10135PIPPSAPSKRHN
NbenIDA2ANiben101Scf23219:7370..7663 reverse9732PIPPSAPSKRHN
NbenIDA2BNiben101Scf03368:114599..114892 reverse9732PIPPSAPSKRHN
NbenIDA3ANiben101Scf18667:206436..206678 forward8032PIPPSAPSKRHN
NbenIDA3BNiben101Scf01180:267334..267576 reverse8032PIPPSAPSKRHN
NbenIDA4Niben101Scf19133:87532..87771 forward7925PIPPSAPSQRHN
NbenIDA5ANiben101Scf03848:699324..699575 forward8330PIPASGPSRKHN
NbenIDA5BNiben101Scf02135:404883..405122 reverse7926PIPASGPSRKHN
SlycIDA1SL3.0ch05:4200134..4200439 forward10136PIPPSAPSKRHN
SlycIDA2SL3.0ch06:38623220..38623453 forward7730PIPPSAPSKRHN
SlycIDA3SL3.0ch04:5799910..5800149 forward7927PIPPSSPSKRHN
SlycIDA4SL3.0ch07:58068277..58068558 reverse9334PIPPSAPSKRCN
SlycIDA5SL3.0ch05:1629558..1629893 forward11129LIPPSGPSRRHN
SlycIDA6SL3.0ch09:540104..540379 reverse9126PIPPSAPSCRSS
SlycIDA7SL3.0ch09:546577..546855 reverse9227PLPPSAPSCRSS
SlycIDA8SL3.0ch11:533813..534061 reverse8228PIPASGPSRKHN
StubIDA1PGSC0003DMB000000071:252349..252627 reverse9227PIPPSAPSCRSS
StubIDA2PGSC0003DMB000000131:879373..879621 forward8228PIPASGPSRKHN
StubIDA3PGSC0003DMB000000243:905236..905523 forward9529PVPPSGPSRRHN
StubIDA4PGSC0003DMB000000410:16621..16935 reverse10436PIPPSAPSKRHN
StubIDA5PGSC0003DMB000000420:159814..160050 forward7826PIPPSSPSKRHN
StubIDA6PGSC0003DMB000000461:377302..377535 forward7730PIPPSAPSKRHN
StubIDA7PGSC0003DMB000000592:149451..149714 forward8734PIPPSAPSERCN
SmelIDA1Sme2.5_00993.1:18248..18481 forward7730PIPPSAPSKRHN
SmelIDA2Sme2.5_04429.1:34294..34539 forward8128PIPPSAPSLRHN
SmelIDA3Sme2.5_04724.1:40347..40592 forward8127PIPASGPSRKHN
SmelIDA4Sme2.5_06686.1:19811..20078 forward8525PIPPSAPSDRCN
SmelIDA5Sme2.5_08129.1:7336..7444 forward10234PIPPSGPSKRHN
SmelIDA6Sme2.5_09763.1:10983..11228 reverse8126PVPPSAPSDRCN
CaIDA1PepperUCD10Xch04:178438292..178438525 forward7727PIPPSAPSKRHN
CaIDA2PepperUCD10Xch06:176812434..176812673 reverse7929PIPPSAPSKRHN
CaIDA3PepperUCD10Xch11:6480406..6480714 forward10233PIPPSGPSKRHN
CaIDA4PepperUCD10Xch11:4624209..4624499 forward9635PIPPSAPSKRHN
CaIDA5PepperUCD10Xch11:6480457..6480714 forward8518PIPPSGPSKRHN
CaIDA6PepperUCD10Xch11:27920042..27920356 reverse10424PIPPSEPSPRHN