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Table 4 Expression levels of carotenoid biosynthesis pathway genes

From: Characterization and functional analysis of phytoene synthase gene family in tobacco

  Gene ID Expression level (TPM)
control TRV-PSY1&2
GGPPS TRINITY_DN36651_c0_g1 17.63 19.89
TRINITY_DN35113_c0_g1 43.00 36.22
TRINITY_DN69311_c0_g1 0.37 0.14
TRINITY_DN37040_c0_g1 5.07 5.67
TRINITY_DN40976_c1_g1 108.64 88.71
TRINITY_DN39573_c2_g3 37.03 31.43
PSY TRINITY_DN37717_c1_g3 19.94 6.48
TRINITY_DN39386_c0_g1 106.77 60.14
TRINITY_DN37717_c1_g2 62.61 26.49
PDS TRINITY_DN43680_c0_g1 84.11 119.76
TRINITY_DN43680_c0_g4 105.50 129.32
TRINITY_DN43680_c0_g3 74.50 103.00
Z-ISO TRINITY_DN36957_c0_g1 18.62 21.02
ZDS TRINITY_DN38016_c0_g2 42.63 68.12
CRTISO TRINITY_DN39955_c0_g1 19.45 21.73
β-LCY TRINITY_DN38413_c1_g2 38.36 46.42
TRINITY_DN33447_c0_g1 1.40 3.76
TRINITY_DN33447_c0_g3 2.67 3.90
TRINITY_DN33447_c0_g2 4.51 5.13
ε-LCY TRINITY_DN44017_c2_g2 27.73 47.59
TRINITY_DN44017_c2_g5 43.31 70.72
BCH TRINITY_DN31514_c1_g2 1.33 1.42
TRINITY_DN31514_c0_g1 6.51 18.88
TRINITY_DN31514_c1_g1 1.66 1.41
CYP97A3 TRINITY_DN41762_c0_g1 72.38 91.75
TRINITY_DN41762_c0_g5 36.55 51.21
TRINITY_DN41762_c0_g2 9.60 12.30
CYP97B3 TRINITY_DN42530_c2_g4 13.25 18.58
TRINITY_DN42530_c2_g2 10.87 15.26
CYP97C1 TRINITY_DN42272_c2_g1 25.72 30.82
TRINITY_DN42272_c2_g6 43.38 41.64
ZEP TRINITY_DN42020_c2_g1 105.06 108.99
TRINITY_DN42020_c2_g2 2.36 2.50
NXS TRINITY_DN32596_c0_g1 12.66 11.48
TRINITY_DN36045_c5_g2 11.89 7.33
TRINITY_DN35901_c3_g1 12.86 5.78
TRINITY_DN36045_c5_g4 8.55 8.53
TRINITY_DN39824_c2_g5 0.37 0.45
  1. GGPPS, geranylgeranyl diphosphate synthase. PSY, phytoene synthase. PDS, phytoene desaturase. Z-ISO, ζ-isomerase. ZDS, ζ-carotene desaturase. CRTISO, carotenoid isomerase. β-LCY, lycopene β-cyclase. ε-LCY, lycopene ε-cyclase. BCH, carotenoid β-hydroxylase. CYP97A3, cytochrome P450 97A3. CYP97B3, cytochrome P450 97B3. CYP97C1, cytochrome P450 97C1. ZEP, zeaxanthin epoxidase. NXS, neoxanthin synthase. TPM, transcripts per million