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Table 4 Expression levels of carotenoid biosynthesis pathway genes

From: Characterization and functional analysis of phytoene synthase gene family in tobacco

 

Gene ID

Expression level (TPM)

control

TRV-PSY1&2

GGPPS

TRINITY_DN36651_c0_g1

17.63

19.89

TRINITY_DN35113_c0_g1

43.00

36.22

TRINITY_DN69311_c0_g1

0.37

0.14

TRINITY_DN37040_c0_g1

5.07

5.67

TRINITY_DN40976_c1_g1

108.64

88.71

TRINITY_DN39573_c2_g3

37.03

31.43

PSY

TRINITY_DN37717_c1_g3

19.94

6.48

TRINITY_DN39386_c0_g1

106.77

60.14

TRINITY_DN37717_c1_g2

62.61

26.49

PDS

TRINITY_DN43680_c0_g1

84.11

119.76

TRINITY_DN43680_c0_g4

105.50

129.32

TRINITY_DN43680_c0_g3

74.50

103.00

Z-ISO

TRINITY_DN36957_c0_g1

18.62

21.02

ZDS

TRINITY_DN38016_c0_g2

42.63

68.12

CRTISO

TRINITY_DN39955_c0_g1

19.45

21.73

β-LCY

TRINITY_DN38413_c1_g2

38.36

46.42

TRINITY_DN33447_c0_g1

1.40

3.76

TRINITY_DN33447_c0_g3

2.67

3.90

TRINITY_DN33447_c0_g2

4.51

5.13

ε-LCY

TRINITY_DN44017_c2_g2

27.73

47.59

TRINITY_DN44017_c2_g5

43.31

70.72

BCH

TRINITY_DN31514_c1_g2

1.33

1.42

TRINITY_DN31514_c0_g1

6.51

18.88

TRINITY_DN31514_c1_g1

1.66

1.41

CYP97A3

TRINITY_DN41762_c0_g1

72.38

91.75

TRINITY_DN41762_c0_g5

36.55

51.21

TRINITY_DN41762_c0_g2

9.60

12.30

CYP97B3

TRINITY_DN42530_c2_g4

13.25

18.58

TRINITY_DN42530_c2_g2

10.87

15.26

CYP97C1

TRINITY_DN42272_c2_g1

25.72

30.82

TRINITY_DN42272_c2_g6

43.38

41.64

ZEP

TRINITY_DN42020_c2_g1

105.06

108.99

TRINITY_DN42020_c2_g2

2.36

2.50

NXS

TRINITY_DN32596_c0_g1

12.66

11.48

TRINITY_DN36045_c5_g2

11.89

7.33

TRINITY_DN35901_c3_g1

12.86

5.78

TRINITY_DN36045_c5_g4

8.55

8.53

TRINITY_DN39824_c2_g5

0.37

0.45

  1. GGPPS, geranylgeranyl diphosphate synthase. PSY, phytoene synthase. PDS, phytoene desaturase. Z-ISO, ζ-isomerase. ZDS, ζ-carotene desaturase. CRTISO, carotenoid isomerase. β-LCY, lycopene β-cyclase. ε-LCY, lycopene ε-cyclase. BCH, carotenoid β-hydroxylase. CYP97A3, cytochrome P450 97A3. CYP97B3, cytochrome P450 97B3. CYP97C1, cytochrome P450 97C1. ZEP, zeaxanthin epoxidase. NXS, neoxanthin synthase. TPM, transcripts per million