Skip to main content

Table 1 PSY genes identified in four Nicotiana species

From: Characterization and functional analysis of phytoene synthase gene family in tobacco

  Gene name Gene ID Exon number MW (KDa) PI CDS (bp) Length (aa) Pfam Matches
ID Start End
N. tabacum NtPSY1–1 mRNA_24760_cds 7 46.53 7.53 1233 410 PF00494 129 384
NtPSY1–2 mRNA_28821_cds 7 46.56 8.1 1233 410 PF00494 129 384
NtPSY2–1 mRNA_108630_cds 7 49.55 8.98 1323 440 PF00494 155 410
NtPSY2–2 mRNA_3350_cds 7 49.72 9.16 1326 441 PF00494 156 411
NtPSY3–1 mRNA_22099_cds 6 43.75 8.71 1146 381 PF00494 104 358
NtPSY3–2 mRNA_111132_cds 6 43.83 8.51 1146 381 PF00494 103 358
N. benthamiana NibenPSY1–1 Niben101Scf01959g00004 8 46.52 6.78 1233 410 PF00494 129 384
NibenPSY1–2 Niben101Scf04020g00002 8 50.29 7.51 1326 441 PF00494 129 382
NibenPSY2 Niben101Scf07253g01008 8 49.64 8.75 1323 440 PF00494 157 412
NibenPSY3–1 Niben101Scf08679g04027 6 44.14 8.60 1146 381 PF00494 103 358
NibenPSY3–2 Niben101Scf04118g01004 7 34.86 6.74 924 307 PF00494 83 252
N. sylvestris NsylPSY1 mRNA_81209_cds 7 46.53 7.53 1233 410 PF00494 129 384
NsylPSY2 mRNA_73510_cds 7 49.34 8.98 1317 438 PF00494 155 410
NsylPSY3 mRNA_53352_cds 6 43.90 8.63 1146 381 PF00494 103 358
N. tomentosiformis NtomPSY1 mRNA_60982_cds 7 46.56 8.10 1314 410 PF00494 129 384
NtomPSY2 mRNA_59648_cds 7 49.51 9.16 1320 439 PF00494 156 411
NtomPSY3 mRNA_83828_cds 6 43.83 8.51 1146 381 PF00494 103 358
  1. The gene IDs shown were extracted from the genomic annotation information of each species deposited in Sol Genomics Network (SGN) database (https://solgenomics.net/). The genome version of N. tabacum used here was reported by Sierro et al., 2014 [37]