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Table 3 Association analysis of stripe rust resistance using the general linear model + population structure (GLM + PC)

From: Genomic regions associated with stripe rust resistance against the Egyptian race revealed by genome-wide association study

SNP ID

Chro.

-log10 (P- value)

Target allele(1)

Allele effect (2)

R2 (3) (%)

2019

2020

2019

2020

2019

2020

S2A_16067928

2A

6.19

3.18

G:C

-46.36

-53.5

11.17

29.89

S2A_16881495

2A

4.19

3.29

C:T

-55.17

-42.30

14.19

14.26

S2A_9121999

2A

3.23

3.07

T:G

-37.43

-32.78

23.24

30.75

S4A_657492521

4A

3.25

4.78

G:A

-40.51

-41.6

11.45

21.96

S4A_658402828

4A

3.29

4.34

A:G

-55.96

-65.02

11.03

19.351

  1. (1) The left allele increased the resistance, (2) The effect of the left allele associated with increasing the resistance, (3) Phenotypic variation explained by marker