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Table 1 Basic features of C5-MTase and dMTase genes identified in D. officinale

From: Genome-wide identification and analysis of DNA methyltransferase and demethylase gene families in Dendrobium officinale reveal their potential functions in polysaccharide accumulation

Gene name

Gene ID

Chromosome location

ORFa (bp)

AAb (aa)

MWc (kDa)

GRAVYd value

pIe

Intronf

Predicted subcellular localization

DoMET1

Dca001068

Scaff_scaffold_716

4605

1534

173.71

-0.414

5.76

18

Nuclear

DoCMT1

Dca005086

Scaff_scaffold_370

2883

960

107.69

-0.626

6.24

26

Nuclear

DoCMT2

Dca003680

Scaff_scaffold_390

975

324

36.43

-0.238

7.49

7

Nuclear

DoCMT3

Dca021108

Scaff_scaffold_883

2670

889

100.30

-0.543

5.34

28

Nuclear

DoDRM1

Dca019831

Scaff_scaffold_547

1425

474

53.70

-0.367

9.16

5

Cytoplasmic

DoDRM2

Dca002179

Scaff_scaffold_1220

1749

582

65.32

-0.469

5.00

12

Nuclear

DoDRM3

Dca020469

Scaff_scaffold_726

1473

527

59.32

-0.416

6.18

17

Nuclear

DoDNMT2

Dca009405

Scaff_scaffold_264

1053

350

40.11

-0.235

6.60

13

Nuclear

DoDML3

Dca014673

Scaff_scaffold_807

4143

1380

156.56

-0.597

7.85

39

Nuclear

DoROS1a

Dca024052

Scaff_scaffold_489

5568

1855

207.52

-0.592

7.01

37

Nuclear

DoROS1b

Dca020504

Scaff_scaffold_993

5712

1903

212.56

-0.603

6.70

34

Nuclear

  1. aORF, open reading frame; bAA, amino acid; cMW, molecular weight; dGRAVY, grand average of hydrophobicity; epI, theoretical isoelectric point; fIntron, number of introns. Subcellular localization was predicted by Plant-mPLoc (http://www.csbio.sjtu.edu.cn/bioinf/plant-multi/)