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Table 3 Size, number, and distribution of tandem repeats in the plastomes of Polypodiaceae

From: Comparative genomic analysis of Polypodiaceae chloroplasts reveals fine structural features and dynamic insertion sequences

Sample

Motif

Count

Start-end

Location

N. ovatus

19

4

83,880-83,955

trnT-UGU intron

23

2.3

108,602-108,647

rpl21-rpl32

19

4

149,099-149,174

trnT-UGU intron

N. fortunei

26

2

27,472-27,523

psbM-petN

15

3

52,744-52,788

trnR-UCG-accD

15

3.9

116,723-116,781

ndhA-intron

P. cuspidatus

45

2

1719-1809

matK-rps16

26

2.5

2183-2248

matK-rps16

15

3

113,805-113,849

psaC-ndhE

P. niponica

18

3

25,927-25,980

rpoB-trnD-GUC

15

5

53,389-53,463

trnR-UCG-accD

L. clathratus

24

2

1894-1941

matK-rps16

22

2

21,463-21,506

rpoC1 intron

26

2

93,242-93,293

rrn16-rps12

27

3

93,291-93,380

rrn16-rps12

69

2

93,405-93,542

rrn16-rps12

46

4

93,470-93,653

rrn16-rps12

46

4

144,421-144,604

rps12-rrn16

27

3

144,716-144,796

rps12-rrn16

18

4

144,797-144,848

rps12-rrn16

L. microphyllum

30

1.9

12,813-12,870

atpH-atpI

18

3.1

97,069-97,123

rps7-psbA

47

2.2

98,673-98,773

rps7-psbA

27

1.9

98,749-98,800

rps7-psbA

27

2.9

98,870-98,948

rps7-psbA

15

5

119,960-120,034

ndhA intron

27

2.9

140,326-140,404

psbA- rps7

27

1.9

140,474-140,525

psbA- rps7

47

2.2

140,501-140,601

psbA- rps7

18

3.1

142,151-142,205

psbA- rps7

L. hemionitideus

22

2

19,153-19,197

rpoC2-rpoC1

25

1.9

74,525-74,572

rps11-rpl36

P. bonii

23

2

120,079-120,124

ndhA intron

D. roosii

146

2

5433-5711

trnQ-UGG-psbK

23

2

19,077-19,122

rpoC2-rpoC1

18

3

54,433–54,486

rbcL-trnR-UCG

47

3

54,550-55,871

rbcL-trnR-UCG

42

2

54,644-54,727

rbcL-trnR-UCG

S. yakushimensis

26

2

26,779-26,831

psbM-petN

28

3.2

125,129-125,218

ndhF-ndhD