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Table 2 QTLs for preharvest sprouting

From: Targeted amplicon sequencing + next-generation sequencing–based bulked segregant analysis identified genetic loci associated with preharvest sprouting tolerance in common buckwheat (Fagopyrum esculentum)

Populations QTLs LG Closest marker peak position (cM) LOD Additive effectb Dominant effect R2 (%)c
(position (cM))
Cross A_1 qPHS1_KY29 1 Sh_11581 –PHS_17515 71.2 4.08 10.29 −0.48 11.7
(69.0)–(71.2)
qPHS6_KY29 6 WG_1684 – WG_26859 59.5 4.54 12.21 −7.44 15.6
(36.5)–(59.5)
qPHS4_KY29a 4 WG_657 – PHS_9932 57.8 2.44 8.26 −3.5 7.4
(52.8)–(58.8)
qPHS7_KY29a 7 WG_982 – WG_7916 49.6 2.35 −7.05 −3.3 7.5
(46.6)–(57.7)
Cross B_1 qPHS1_KY28 1 Sh_11090 – Sh_3180 45 3.54 −9.18 6.45 9
(43.2)–(45.0)
qPHS3_KY28 3 PHS_31886 – WG_1572 3.5 4.09 12.78 5.61 10.6
(2.9)–(3.5)
qPHS4_KY28 4 PHS_921 – PHS_10421 5.2 7.48 17.28 −0.36 22
(5.2)–(7.6)
qPHS8_KY28 8 WG_21775 – WG_1135 7 5.58 −14.83 −1.84 15.7
(6.0)–(8.3)
qPHS5_KY28a 5 WG_119 – WG_16811 47.6 2.82 −5.91 11.62 7.1
(44.6)–(52.4)
Cross C qPHS3_NF1 3 WG_1572 – PHS_12618 53.2 3.47 4.44 4.26 12
(51.9)–(53.2)
qPHS8_NF1 8 WG_6029 –WG_1135 12.1 4.49 −4.16 4.64 16
(8.1)–(15.5)
qPHS2_NF1a 2 WG_74 – WG_1243 24.1 3.06 3.58 4.35 10
(13.1)–(24.1)
  1. aMinor QTLs
  2. bEffect contributed by KSC7 alleles
  3. cPercentage of total variation in marker association for each trait across population explained by QTL