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Table 2 Ka/Ks analysis for the duplicated PHD gene pairs from G. hirsutum

From: Response of phytohormone mediated plant homeodomain (PHD) family to abiotic stress in upland cotton (Gossypium hirsutum spp.)

Duplicated gene 1 Duplicated gene 2 Ka Ks Ka/Ks Purifying selection Duplicate type
GhPHD1 GhPHD11 0.064 0.533 0.119 Yes Segmental
GhPHD1 GhPHD62 0.064 0.533 0.119 Yes Segmental
GhPHD2 GhPHD58 0.011 0.043 0.248 Yes Segmental
GhPHD5 GhPHD60 0.016 0.039 0.411 Yes Segmental
GhPHD5 GhPHD95 0.126 0.389 0.324 Yes Segmental
GhPHD6 GhPHD63 0.004 0.048 0.089 Yes Segmental
GhPHD9 GhPHD61 0.007 0.032 0.212 Yes Segmental
GhPHD10 GhPHD14 0.232 0.441 0.526 Yes Segmental
GhPHD10 GhPHD47 0.245 0.488 0.502 Yes Segmental
GhPHD10 GhPHD67 0.241 0.471 0.512 Yes Segmental
GhPHD10 GhPHD101 0.235 0.446 0.527 Yes Segmental
GhPHD11 GhPHD53 0.039 0.606 0.064 Yes Segmental
GhPHD11 GhPHD62 0.004 0.014 0.282 Yes Segmental
GhPHD13 GhPHD66 0.009 0.053 0.169 Yes Segmental
GhPHD14 GhPHD47 0.376 0.666 0.564 Yes Segmental
GhPHD14 GhPHD67 0.018 0.046 0.387 Yes Segmental
GhPHD15 GhPHD68 0.030 0.063 0.468 Yes Segmental
GhPHD16 GhPHD28 0.089 0.311 0.285 Yes Segmental
GhPHD16 GhPHD77 0.045 0.352 0.129 Yes Segmental
GhPHD16 GhPHD82 0.053 0.405 0.130 Yes Segmental
GhPHD17 GhPHD71 0.008 0.034 0.235 Yes Segmental
GhPHD17 GhPHD81 0.075 0.381 0.196 Yes Segmental
GhPHD19 GhPHD25 0.081 0.447 0.180 Yes Segmental
GhPHD19 GhPHD40 0.083 0.451 0.184 Yes Segmental
GhPHD19 GhPHD73 0.026 0.053 0.492 Yes Segmental
GhPHD19 GhPHD79 0.083 0.496 0.167 Yes Segmental
GhPHD19 GhPHD93 0.085 0.451 0.188 Yes Segmental
GhPHD20 GhPHD74 0.024 0.032 0.753 Yes Segmental
GhPHD22 GhPHD51 0.080 0.398 0.200 Yes Segmental
GhPHD22 GhPHD65 0.007 0.028 0.240 Yes Segmental
GhPHD22 GhPHD104 0.079 0.391 0.201 Yes Segmental
GhPHD28 GhPHD77 0.085 0.284 0.298 Yes Segmental
GhPHD28 GhPHD82 0.042 0.037 1.121 No Segmental
GhPHD24 GhPHD78 0.003 0.039 0.086 Yes Segmental
GhPHD25 GhPHD73 0.057 0.434 0.131 Yes Segmental
GhPHD25 GhPHD79 0.016 0.017 0.982 Yes Segmental
GhPHD26 GhPHD44 0.204 0.368 0.553 Yes Segmental
GhPHD26 GhPHD98 0.186 0.344 0.541 Yes Segmental
GhPHD29 GhPHD83 0.019 0.041 0.473 Yes Segmental
GhPHD31 GhPHD85 0.011 0.031 0.356 Yes Segmental
GhPHD32 GhPHD86 0.015 0.027 0.554 Yes Segmental
GhPHD34 GhPHD88 0.006 0.021 0.288 Yes Segmental
GhPHD36 GhPHD89 0.015 0.031 0.499 Yes Segmental
GhPHD39 GhPHD92 0.014 0.040 0.339 Yes Segmental
GhPHD40 GhPHD73 0.051 0.442 0.116 Yes Segmental
GhPHD40 GhPHD93 0.002 0.054 0.035 Yes Segmental
GhPHD41 GhPHD94 0.013 0.031 0.416 Yes Segmental
GhPHD44 GhPHD98 0.022 0.052 0.413 Yes Segmental
GhPHD46 GhPHD54 0.127 0.418 0.304 Yes Segmental
GhPHD46 GhPHD100 0.014 0.055 0.256 Yes Segmental
GhPHD46 GhPHD107 0.101 0.395 0.256 Yes Segmental
GhPHD47 GhPHD67 0.231 0.450 0.514 Yes Segmental
GhPHD47 GhPHD101 0.016 0.030 0.530 Yes Segmental
GhPHD49 GhPHD102 0.006 0.035 0.163 Yes Segmental
GhPHD50 GhPHD103 0.011 0.048 0.233 Yes Segmental
GhPHD51 GhPHD65 0.079 0.389 0.202 Yes Segmental
GhPHD51 GhPHD104 0.010 0.036 0.270 Yes Segmental
GhPHD52 GhPHD80 0.038 0.528 0.072 Yes Segmental
GhPHD53 GhPHD62 0.039 0.606 0.064 Yes Segmental
GhPHD54 GhPHD100 0.140 0.416 0.336 Yes Segmental
GhPHD54 GhPHD107 0.136 0.405 0.335 Yes Segmental
GhPHD55 GhPHD106 0.023 0.045 0.497 Yes Segmental
GhPHD56 GhPHD76 0.236 0.639 0.369 Yes Segmental
GhPHD56 GhPHD108 0.007 0.051 0.132 Yes Segmental
GhPHD60 GhPHD95 0.125 0.397 0.314 Yes Segmental
GhPHD65 GhPHD104 0.078 0.386 0.203 Yes Segmental
GhPHD67 GhPHD101 0.225 0.456 0.492 Yes Segmental
GhPHD71 GhPHD81 0.075 0.369 0.203 Yes Segmental
GhPHD73 GhPHD79 0.054 0.486 0.111 Yes Segmental
GhPHD73 GhPHD93 0.053 0.419 0.127 Yes Segmental
GhPHD76 GhPHD108 0.237 0.630 0.376 Yes Segmental
GhPHD91 GhPHD38 0.016 0.052 0.298 Yes Segmental
GhPHD100 GhPHD107 0.104 0.379 0.276 Yes Segmental
GhPHD2 GhPHD3 0.035 0.122 0.289 Yes Tandem
GhPHD32 GhPHD33 0.031 0.076 0.407 Yes Tandem
GhPHD58 GhPHD59 0.029 0.138 0.212 Yes Tandem
GhPHD86 GhPHD87 0.027 0.062 0.428 Yes Tandem