Table 1 Physicochemical parameters of 108 GhPHD genes in G. hirsutum
Name | Protein length (aa) | Molecular weight (kDa) | Charge | Isoelectric point | Grand average of hydropathy | Subcellular localization |
|---|---|---|---|---|---|---|
GhPHD1 | 217 | 24.915 | 5 | 7.895 | − 0.694 | Nuclear |
GhPHD2 | 1033 | 114.441 | 32.5 | 8.49 | −0.274 | Nuclear |
GhPHD3 | 1030 | 114.182 | 36 | 8.594 | −0.306 | Nuclear |
GhPHD4 | 815 | 90.024 | 5 | 6.895 | −0.323 | Nuclear |
GhPHD5 | 1303 | 144.878 | −9.5 | 6.002 | −0.713 | Nuclear |
GhPHD6 | 700 | 79.363 | −4.5 | 6.21 | −0.308 | Nuclear |
GhPHD7 | 700 | 79.363 | −4.5 | 6.21 | −0.308 | Nuclear |
GhPHD8 | 345 | 39.474 | 12 | 8.648 | −0.573 | Nuclear |
GhPHD9 | 251 | 28.253 | −8 | 4.891 | −0.621 | Nuclear |
GhPHD10 | 786 | 86.704 | −35.5 | 4.631 | −0.966 | Nuclear |
GhPHD11 | 216 | 24.846 | 8.5 | 8.262 | −0.789 | Nuclear |
GhPHD12 | 375 | 42.862 | 5.5 | 7.542 | −0.708 | Nuclear |
GhPHD13 | 237 | 26.757 | −4 | 5.421 | −0.596 | Nuclear |
GhPHD14 | 959 | 104.731 | −3 | 6.227 | −1.126 | Nuclear |
GhPHD15 | 733 | 82.869 | 40.5 | 9.936 | −0.907 | Nuclear |
GhPHD16 | 252 | 28.482 | −8.5 | 4.84 | −0.717 | Nuclear |
GhPHD17 | 1680 | 189.096 | 46.5 | 8.1 | −0.669 | Nuclear |
GhPHD18 | 252 | 28.35 | −7.5 | 4.894 | −0.661 | Nuclear |
GhPHD19 | 238 | 27.277 | 4.5 | 7.669 | −0.648 | Cytoplasmic |
GhPHD20 | 493 | 55.306 | 5 | 7.03 | −0.485 | Nuclear |
GhPHD21 | 600 | 67.261 | 5.5 | 7.049 | −0.611 | Nuclear |
GhPHD22 | 1084 | 122.987 | 34 | 8.276 | −0.574 | Nuclear |
GhPHD23 | 253 | 28.577 | −5.5 | 5.132 | −0.736 | Nuclear |
GhPHD24 | 259 | 29.239 | −7.5 | 4.915 | −0.708 | Nuclear |
GhPHD25 | 224 | 25.723 | 6.5 | 8.087 | −0.682 | Cytoplasmic |
GhPHD26 | 870 | 95.472 | 3 | 6.876 | −0.472 | Nuclear |
GhPHD27 | 1358 | 154.506 | 35 | 7.891 | −0.677 | Nuclear |
GhPHD28 | 159 | 17.763 | 0 | 6.496 | −0.666 | Extracellular |
GhPHD29 | 733 | 80.954 | 22 | 8.271 | −0.664 | Nuclear |
GhPHD30 | 1247 | 141.67 | 24 | 7.655 | −0.43 | Nuclear |
GhPHD31 | 949 | 104.907 | 2.5 | 6.779 | −0.416 | Nuclear |
GhPHD32 | 1618 | 180.35 | 45 | 8.404 | −0.446 | Nuclear |
GhPHD33 | 1618 | 180.725 | 41.5 | 8.289 | −0.442 | Nuclear |
GhPHD34 | 216 | 24.95 | 8.5 | 8.399 | −0.783 | Nuclear |
GhPHD35 | 321 | 35.88 | −4.5 | 5.599 | −0.049 | Extracellular |
GhPHD36 | 822 | 88.768 | 2 | 6.651 | −0.539 | Nuclear |
GhPHD37 | 1305 | 143.316 | −33.5 | 4.951 | −0.624 | Nuclear |
GhPHD38 | 705 | 78.949 | 22 | 8.309 | −0.315 | Extracellular |
GhPHD39 | 2231 | 247.421 | −36 | 5.321 | −0.444 | Nuclear |
GhPHD40 | 226 | 25.942 | 6 | 8.086 | −0.788 | Nuclear |
GhPHD41 | 1685 | 187.671 | −4.5 | 6.321 | −0.389 | Nuclear |
GhPHD42 | 1239 | 138.122 | −0.5 | 6.487 | −0.735 | Nuclear |
GhPHD43 | 253 | 28.585 | −6 | 5.13 | −0.76 | Nuclear |
GhPHD44 | 531 | 58.455 | −4 | 5.77 | −0.564 | Nuclear |
GhPHD45 | 389 | 44.625 | 26.5 | 9.906 | −0.405 | Nuclear |
GhPHD46 | 803 | 90.452 | −16.5 | 5.132 | −0.836 | Nuclear |
GhPHD47 | 851 | 94.805 | −26 | 4.895 | −1.011 | Nuclear |
GhPHD48 | 212 | 23.802 | 26 | 10.41 | −0.745 | Nuclear |
GhPHD49 | 1019 | 116.396 | 18 | 7.609 | −0.584 | Nuclear |
GhPHD50 | 655 | 74.308 | 11 | 7.433 | −0.207 | Cytoplasmic |
GhPHD51 | 1091 | 124.448 | 45 | 8.516 | −0.59 | Nuclear |
GhPHD52 | 237 | 26.997 | −3.5 | 5.244 | −0.666 | Nuclear |
GhPHD53 | 216 | 24.723 | 6.5 | 8.049 | −0.785 | Nuclear |
GhPHD54 | 716 | 81.912 | −38.5 | 4.581 | −1.1 | Nuclear |
GhPHD55 | 1367 | 152.049 | 3 | 6.689 | −0.451 | Nuclear |
GhPHD56 | 254 | 28.492 | −6.5 | 5.136 | −0.576 | Cytoplasmic |
GhPHD57 | 217 | 24.929 | 5 | 7.895 | −0.684 | Nuclear |
GhPHD58 | 1031 | 114.246 | 33.5 | 8.459 | −0.299 | Nuclear |
GhPHD59 | 1031 | 113.878 | 36.5 | 8.592 | −0.306 | Nuclear |
GhPHD60 | 1299 | 144.45 | −11.5 | 5.886 | −0.711 | Nuclear |
GhPHD61 | 290 | 32.821 | −8.5 | 4.832 | −0.419 | Nuclear |
GhPHD62 | 216 | 24.835 | 8.5 | 8.262 | −0.789 | Nuclear |
GhPHD63 | 699 | 79.319 | −4.5 | 6.21 | −0.283 | Nuclear |
GhPHD64 | 345 | 39.311 | 13 | 8.745 | −0.544 | Nuclear |
GhPHD65 | 1084 | 123.101 | 34 | 8.275 | −0.579 | Nuclear |
GhPHD66 | 237 | 26.615 | −2 | 5.973 | −0.561 | Nuclear |
GhPHD67 | 945 | 103.676 | −2 | 6.329 | −1.136 | Nuclear |
GhPHD68 | 684 | 77.195 | 23 | 9.073 | −0.859 | Nuclear |
GhPHD69 | 733 | 83.057 | 34.5 | 9.713 | −0.91 | Nuclear |
GhPHD70 | 252 | 28.414 | −8.5 | 4.84 | −0.697 | Nuclear |
GhPHD71 | 1731 | 194.29 | 53 | 8.282 | −0.675 | Nuclear |
GhPHD72 | 252 | 28.35 | −7.5 | 4.894 | −0.661 | Nuclear |
GhPHD73 | 224 | 25.664 | 7.5 | 8.248 | −0.774 | Cytoplasmic |
GhPHD74 | 367 | 41.019 | 5 | 7.341 | −0.49 | Nuclear |
GhPHD75 | 601 | 67.379 | 2 | 6.696 | −0.611 | Nuclear |
GhPHD76 | 241 | 27.506 | −0.5 | 6.269 | −0.502 | Extracellular |
GhPHD77 | 253 | 28.677 | −5.5 | 5.139 | −0.752 | Nuclear |
GhPHD78 | 252 | 28.407 | −7.5 | 4.889 | −0.682 | Nuclear |
GhPHD79 | 186 | 21.734 | 1.5 | 6.851 | −0.752 | Cytoplasmic |
GhPHD80 | 237 | 27.077 | −4 | 5.221 | −0.689 | Extracellular |
GhPHD81 | 1356 | 154.398 | 31 | 7.737 | −0.674 | Nuclear |
GhPHD82 | 236 | 26.789 | −12 | 4.605 | −0.598 | Cytoplasmic |
GhPHD83 | 676 | 74.819 | 22.5 | 8.253 | −0.665 | Nuclear |
GhPHD84 | 1382 | 156.796 | 34 | 7.925 | −0.467 | Nuclear |
GhPHD85 | 949 | 104.967 | 2.5 | 6.779 | −0.426 | Nuclear |
GhPHD86 | 1653 | 183.656 | 37.5 | 8.15 | −0.449 | Nuclear |
GhPHD87 | 1618 | 180.589 | 39 | 8.234 | −0.447 | Nuclear |
GhPHD88 | 216 | 24.836 | 5.5 | 7.902 | −0.775 | Cytoplasmic |
GhPHD89 | 822 | 88.688 | 0 | 6.506 | −0.531 | Nuclear |
GhPHD90 | 1301 | 142.837 | −35.5 | 4.873 | −0.619 | Nuclear |
GhPHD91 | 705 | 78.888 | 23.5 | 8.373 | −0.305 | Nuclear |
GhPHD92 | 2182 | 241.654 | −34 | 5.362 | −0.441 | Nuclear |
GhPHD93 | 226 | 25.984 | 6 | 8.086 | −0.767 | Nuclear |
GhPHD94 | 1685 | 187.566 | −4 | 6.345 | −0.397 | Nuclear |
GhPHD95 | 1237 | 137.855 | −0.5 | 6.486 | −0.718 | Nuclear |
GhPHD96 | 253 | 28.613 | −6 | 5.13 | −0.75 | Nuclear |
GhPHD97 | 696 | 78.217 | 18.5 | 8.023 | −0.17 | Nuclear |
GhPHD98 | 503 | 55.441 | −5.5 | 5.455 | −0.597 | Nuclear |
GhPHD99 | 385 | 44.394 | 31 | 10.216 | −0.428 | Nuclear |
GhPHD100 | 812 | 91.657 | −29 | 4.818 | −0.838 | Nuclear |
GhPHD101 | 859 | 95.86 | −32.5 | 4.789 | −1.023 | Nuclear |
GhPHD102 | 1019 | 116.3 | 19 | 7.67 | −0.593 | Nuclear |
GhPHD103 | 655 | 74.268 | 11.5 | 7.443 | −0.219 | Cytoplasmic |
GhPHD104 | 1091 | 124.625 | 43 | 8.46 | −0.581 | Nuclear |
GhPHD105 | 889 | 101.493 | −32 | 4.811 | −0.882 | Nuclear |
GhPHD106 | 1305 | 145.225 | 9.5 | 7.121 | −0.424 | Nuclear |
GhPHD107 | 801 | 90.038 | −12.5 | 5.251 | −0.805 | Nuclear |
GhPHD108 | 252 | 28.259 | −6.5 | 5.136 | −0.619 | Cytoplasmic |