TY - JOUR AU - Luo, L. J. AU - Xia, H. AU - Lu, B. R. PY - 2019 DA - 2019// TI - Editorial: crop breeding for drought resistance JO - Front Plant Sci VL - 10 UR - https://doi.org/10.3389/fpls.2019.00314 DO - 10.3389/fpls.2019.00314 ID - Luo2019 ER - TY - JOUR AU - Banks, J. M. AU - Percival, G. C. AU - Rose, G. PY - 2019 DA - 2019// TI - Variations in seasonal drought tolerance rankings JO - Trees. VL - 33 UR - https://doi.org/10.1007/s00468-019-01842-5 DO - 10.1007/s00468-019-01842-5 ID - Banks2019 ER - TY - JOUR AU - Pflug, E. E. AU - Buchmann, N. AU - Siegwolf, R. T. W. AU - Schaub, M. AU - Rigling, A. AU - Arend, M. PY - 2018 DA - 2018// TI - Resilient leaf physiological response of european beech (Fagus sylvatica L.) to summer drought and drought release. Front JO - Plant Sci VL - 9 ID - Pflug2018 ER - TY - JOUR AU - Hein, J. A. AU - Sherrard, M. E. AU - Manfredi, K. P. AU - Abebe, T. PY - 2016 DA - 2016// TI - The fifth leaf and spike organs of barley (Hordeum vulgare L.) display different physiological and metabolic responses to drought stress JO - BMC Plant Biol VL - 16 UR - https://doi.org/10.1186/s12870-016-0922-1 DO - 10.1186/s12870-016-0922-1 ID - Hein2016 ER - TY - JOUR AU - Torres-Franklin, M. L. AU - Gigon, A. AU - Melo, D. F. D. AU - Zuily-Fodil, Y. AU - Pham-Thi, A. T. PY - 2007 DA - 2007// TI - Drought stress and rehydration affect the balance between MGDG and DGDG synthesis in cowpea leaves JO - Physiol Plant VL - 131 ID - Torres-Franklin2007 ER - TY - JOUR AU - Furlan, A. AU - Bianucci, E. AU - Tordable, M. D. C. AU - Kleinert, A. AU - Valentine, A. J. AU - Castro, S. PY - 2016 DA - 2016// TI - Dynamic responses of photosynthesis and the antioxidant system during a drought and rehydration cycle in peanut plants JO - Funct Plant Biol VL - 43 UR - https://doi.org/10.1071/FP15206 DO - 10.1071/FP15206 ID - Furlan2016 ER - TY - JOUR AU - Tina, R. R. AU - Shan, X. R. AU - Wang, Y. AU - Guo, S. Y. AU - Mao, B. AU - Wang, W. PY - 2017 DA - 2017// TI - Response of antioxidant system to drought stress and rewatering in alfalfa during branching JO - IOP Conf Ser Earth Environ Sci VL - 94 UR - https://doi.org/10.1088/1755-1315/94/1/012129 DO - 10.1088/1755-1315/94/1/012129 ID - Tina2017 ER - TY - JOUR AU - Xu, Z. Z. AU - Zhou, G. S. AU - Shimizu, H. PY - 2009 DA - 2009// TI - Are plant growth and photosynthesis limited by pre-drought following rewatering in grass? JO - J Exp Bot VL - 60 UR - https://doi.org/10.1093/jxb/erp216 DO - 10.1093/jxb/erp216 ID - Xu2009 ER - TY - JOUR AU - Farooq, M. AU - Wahid, A. AU - Kobayashi, N. AU - Fujita, D. AU - Basra, S. M. A. PY - 2009 DA - 2009// TI - Plant drought stress: effects, mechanisms and management JO - Agron Sustain Dev VL - 29 UR - https://doi.org/10.1051/agro:2008021 DO - 10.1051/agro:2008021 ID - Farooq2009 ER - TY - JOUR AU - Guo, Y. Y. AU - Yu, H. Y. AU - Yang, M. M. AU - Kong, D. S. AU - Zhang, Y. J. PY - 2018 DA - 2018// TI - Effect of drought stress on lipid peroxidation, osmotic adjustment and antioxidant enzyme activity of leaves and roots of Lycium ruthenicum Murr. Seedling JO - Russ J Plant Physiol VL - 65 UR - https://doi.org/10.1134/S1021443718020127 DO - 10.1134/S1021443718020127 ID - Guo2018 ER - TY - JOUR AU - Gong, Z. Z. AU - Xiong, L. M. AU - Shi, H. Z. AU - Yang, S. H. AU - Herrera-Estrella, L. R. AU - Xu, G. H. PY - 2020 DA - 2020// TI - Plant abiotic stress response and nutrient use efficiency JO - Sci China Life Sci VL - 63 UR - https://doi.org/10.1007/s11427-020-1683-x DO - 10.1007/s11427-020-1683-x ID - Gong2020 ER - TY - JOUR AU - Maruyama, K. AU - Urano, K. AU - Yoshiwara, K. AU - Morishita, Y. AU - Sakurai, N. AU - Suzuki, H. PY - 2014 DA - 2014// TI - Integrated analysis of the effects of cold and dehydration on rice metabolites, phytohormones, and gene transcripts JO - Plant Physiol VL - 164 UR - https://doi.org/10.1104/pp.113.231720 DO - 10.1104/pp.113.231720 ID - Maruyama2014 ER - TY - JOUR AU - Fujita, Y. AU - Fujita, M. AU - Satoh, R. AU - Maruyama, K. AU - Parvez, M. M. AU - Seki, M. PY - 2005 DA - 2005// TI - AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis JO - Plant Cell VL - 17 UR - https://doi.org/10.1105/tpc.105.035659 DO - 10.1105/tpc.105.035659 ID - Fujita2005 ER - TY - JOUR AU - Hossain, M. A. AU - Cho, J. I. AU - Han, M. AU - Ahn, C. H. AU - Jeon, J. S. AU - An, G. PY - 2010 DA - 2010// TI - The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice JO - J Plant Physiol VL - 167 UR - https://doi.org/10.1016/j.jplph.2010.05.008 DO - 10.1016/j.jplph.2010.05.008 ID - Hossain2010 ER - TY - JOUR AU - Kim, S. AU - Kang, J. Y. AU - Cho, D. I. AU - Park, J. H. AU - Kim, S. Y. PY - 2004 DA - 2004// TI - ABF2, an ABRE-binding bZIP factor, is an essential component of glucose signaling and its overexpression affects multiple stress tolerance JO - Plant J VL - 40 UR - https://doi.org/10.1111/j.1365-313X.2004.02192.x DO - 10.1111/j.1365-313X.2004.02192.x ID - Kim2004 ER - TY - JOUR AU - Agarwal, P. K. AU - Gupta, K. AU - Lopato, S. AU - Agarwal, P. PY - 2017 DA - 2017// TI - Dehydration responsive element binding transcription factors and their applications for the engineering of stress tolerance JO - J Exp Bot VL - 68 UR - https://doi.org/10.1093/jxb/erx118 DO - 10.1093/jxb/erx118 ID - Agarwal2017 ER - TY - JOUR AU - Fox, H. AU - Doron-Faigenboim, A. AU - Kelly, G. AU - Zhou, J. AU - Moshe, Y. AU - David-Schwartz, R. PY - 2018 DA - 2018// TI - Transcriptome analysis of Pinus halepensis under drought stress and during recovery JO - Tree Physiol VL - 38 UR - https://doi.org/10.1093/treephys/tpx137 DO - 10.1093/treephys/tpx137 ID - Fox2018 ER - TY - JOUR AU - Liu, F. AU - Lin, D. AU - Lin, H. AU - Liu, H. AU - Lin, Z. PY - 2017 DA - 2017// TI - Physiological and photosynthetic responses of Giant JunCao (Pennisetum Giganteum) to drought stress JO - Fresenius Environ Bull VL - 26 ID - Liu2017 ER - TY - JOUR AU - Martin, L. B. B. AU - Fei, Z. J. AU - Giovannoni, J. J. AU - Rose, J. K. C. PY - 2013 DA - 2013// TI - Catalyzing plant science research with RNA-seq JO - Front Plant Sci VL - 4 UR - https://doi.org/10.3389/fpls.2013.00066 DO - 10.3389/fpls.2013.00066 ID - Martin2013 ER - TY - JOUR AU - Zhang, H. AU - He, L. AU - Cai, L. PY - 1754 DA - 1754// TI - Transcriptome sequencing: RNA-Seq JO - Methods Mol Biol VL - 2018 ID - Zhang1754 ER - TY - JOUR AU - Li, W. AU - Jiang, T. PY - 2012 DA - 2012// TI - Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads JO - Bioinform VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts559 DO - 10.1093/bioinformatics/bts559 ID - Li2012 ER - TY - JOUR AU - Camilios-Neto, D. AU - Bonato, P. AU - Wassem, R. AU - Tadra-Sfeir, M. Z. AU - Brusamarello-Santos, L. C. C. AU - Valdameri, G. PY - 2014 DA - 2014// TI - Dual RNA-seq transcriptional analysis of wheat roots colonized by Azospirillum brasilense reveals up-regulation of nutrient acquisition and cell cycle genes JO - BMC Genet VL - 15 UR - https://doi.org/10.1186/1471-2164-15-378 DO - 10.1186/1471-2164-15-378 ID - Camilios-Neto2014 ER - TY - JOUR AU - Zhang, L. M. AU - Liu, X. G. AU - Qu, X. N. AU - Yu, Y. AU - Han, S. P. AU - Dou, Y. PY - 2013 DA - 2013// TI - Early transcriptomic adaptation to Na2CO3 stress altered the expression of a quarter of the total genes in the maize genome and exhibited shared and distinctive profiles with NaCl and high pH stresses JO - J Integr Plant Biol VL - 55 UR - https://doi.org/10.1111/jipb.12100 DO - 10.1111/jipb.12100 ID - Zhang2013 ER - TY - JOUR AU - Zhou, Y. AU - Yang, P. AU - Cui, F. AU - Zhang, F. T. AU - Luo, X. D. AU - Xie, J. K. PY - 2016 DA - 2016// TI - Transcriptome analysis of salt stress responsiveness in the seedlings of Dongxiang wild rice (Oryza rufipogon Griff.) JO - Plos One VL - 11 UR - https://doi.org/10.1371/journal.pone.0146242 DO - 10.1371/journal.pone.0146242 ID - Zhou2016 ER - TY - JOUR AU - Fracasso, A. AU - Trindade, L. M. AU - Amaducci, S. PY - 2016 DA - 2016// TI - Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE JO - BMC Plant Biol VL - 16 UR - https://doi.org/10.1186/s12870-016-0800-x DO - 10.1186/s12870-016-0800-x ID - Fracasso2016 ER - TY - JOUR AU - Wang, Y. Q. AU - Li, L. AU - Tang, S. AU - Liu, J. G. AU - Zhang, H. S. AU - Zhi, H. PY - 2016 DA - 2016// TI - Combined small RNA and degradome sequencing to identify miRNAs and their targets in response to drought in foxtail millet JO - BMC Genet VL - 17 UR - https://doi.org/10.1186/s12863-016-0364-7 DO - 10.1186/s12863-016-0364-7 ID - Wang2016 ER - TY - JOUR AU - Chen, Y. J. AU - Chen, Y. AU - Shi, Z. J. AU - Jin, Y. F. AU - Sun, H. S. AU - Xie, F. C. PY - 2019 DA - 2019// TI - Biosynthesis and signal transduction of ABA, JA, and BRs in response to drought stress of Kentucky bluegrass JO - Int J Mol Sci VL - 20 UR - https://doi.org/10.3390/ijms20061289 DO - 10.3390/ijms20061289 ID - Chen2019 ER - TY - JOUR AU - Zhu, Y. Q. AU - Liu, Q. X. AU - Xu, W. Z. AU - Zhang, J. H. AU - Wang, X. AU - Nie, G. PY - 2019 DA - 2019// TI - De Novo assembly and discovery of genes that involved in drought tolerance in the common vetch JO - Int J Mol Sci VL - 20 UR - https://doi.org/10.3390/ijms20020328 DO - 10.3390/ijms20020328 ID - Zhu2019 ER - TY - JOUR AU - Wu, Q. AU - Zhao, G. AU - Bai, X. AU - Zhao, W. AU - Xiang, D. B. AU - Wan, Y. PY - 2019 DA - 2019// TI - Characterization of the transcriptional profiles in common buckwheat (Fagopyrum esculentum) under PEG-mediated drought stress JO - Electron J Biotechnol VL - 39 UR - https://doi.org/10.1016/j.ejbt.2019.03.005 DO - 10.1016/j.ejbt.2019.03.005 ID - Wu2019 ER - TY - JOUR AU - Zhou, T. AU - Luo, X. J. AU - Yu, C. N. AU - Zhang, C. C. AU - Zhang, L. AU - Song, Y. B. PY - 2019 DA - 2019// TI - Transcriptome analyses provide insights into the expression pattern and sequence similarity of several taxol biosynthesis-related genes in three Taxus species JO - BMC Plant Biol VL - 19 UR - https://doi.org/10.1186/s12870-019-1645-x DO - 10.1186/s12870-019-1645-x ID - Zhou2019 ER - TY - JOUR AU - Leelavathi, S. AU - Bhardwaj, A. AU - Kumar, S. AU - Dass, A. AU - Pathak, R. AU - Pandey, S. S. PY - 2011 DA - 2011// TI - Genome-wide transcriptome and proteome analyses of tobacco psaA and psbA deletion mutants JO - Plant Mol Biol VL - 76 UR - https://doi.org/10.1007/s11103-011-9731-y DO - 10.1007/s11103-011-9731-y ID - Leelavathi2011 ER - TY - JOUR AU - Ku, M. S. B. AU - Agarie, S. AU - Nomura, M. AU - Fukayama, H. AU - Matsuoka, M. AU - Ono, K. PY - 1999 DA - 1999// TI - High-level expression of maize phosphoenolpyruvate carboxylase in transgenic rice plants JO - Nat Biotechnol VL - 17 UR - https://doi.org/10.1038/5256 DO - 10.1038/5256 ID - Ku1999 ER - TY - JOUR AU - Lebouteiller, B. AU - Rolin, D. PY - 2007 DA - 2007// TI - Pierre J-Nl, Bleton J, Tchapla a, Maucourt M, et al. physiological impacts of modulating phosphoenolpyruvate carboxylase levels in leaves and seeds of Arabidopsis thaliana JO - Plant Sci VL - 172 UR - https://doi.org/10.1016/j.plantsci.2006.09.008 DO - 10.1016/j.plantsci.2006.09.008 ID - Lebouteiller2007 ER - TY - JOUR AU - Ort, D. R. AU - Merchant, S. S. AU - Alric, J. AU - Barkan, A. AU - Blankenship, R. E. AU - Bock, R. PY - 2015 DA - 2015// TI - Redesigning photosynthesis to sustainably meet global food and bioenergy demand JO - Proc Natl Acad Sci Unit States Am VL - 112 UR - https://doi.org/10.1073/pnas.1424031112 DO - 10.1073/pnas.1424031112 ID - Ort2015 ER - TY - JOUR AU - Sánchez, R. AU - Flores, A. AU - Cejudo, F. J. PY - 2006 DA - 2006// TI - Arabidopsis phosphoenolpyruvate carboxylase genes encode immunologically unrelated polypeptides and are differentially expressed in response to drought and salt stress JO - Planta. VL - 223 UR - https://doi.org/10.1007/s00425-005-0144-5 DO - 10.1007/s00425-005-0144-5 ID - Sánchez2006 ER - TY - JOUR AU - Bowler, C. AU - Allen, A. E. AU - Moustafa, A. AU - Montsant, A. AU - Eckert, A. AU - Kroth, P. G. PY - 2011 DA - 2011// TI - Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms JO - Mol Biol Evol VL - 29 ID - Bowler2011 ER - TY - JOUR AU - Ma, W. M. AU - Wei, L. Z. AU - Wang, Q. X. AU - Shi, D. J. AU - Chen, H. B. PY - 2008 DA - 2008// TI - Increased activity of the tandem fructose-1,6-bisphosphate aldolase, triosephosphate isomerase and fructose-1,6-bisphosphatase enzymes in Anabaena sp. strain PCC 7120 stimulates photosynthetic yield JO - J Appl Phycol VL - 20 UR - https://doi.org/10.1007/s10811-007-9286-0 DO - 10.1007/s10811-007-9286-0 ID - Ma2008 ER - TY - JOUR AU - Fan, W. AU - Zhang, Z. L. AU - Zhang, Y. L. PY - 2009 DA - 2009// TI - Cloning and molecular characterization of fructose-1,6-bisphosphate aldolase gene regulated by high-salinity and drought in Sesuvium portulacastrum JO - Plant Cell Rep VL - 28 UR - https://doi.org/10.1007/s00299-009-0702-6 DO - 10.1007/s00299-009-0702-6 ID - Fan2009 ER - TY - JOUR AU - Simkin, A. J. AU - McAusland, L. AU - Headland, L. R. AU - Lawson, T. AU - Raines, C. A. PY - 2015 DA - 2015// TI - Multigene manipulation of photosynthetic carbon assimilation increases CO2 fixation and biomass yield in tobacco JO - J Exp Bot VL - 66 UR - https://doi.org/10.1093/jxb/erv204 DO - 10.1093/jxb/erv204 ID - Simkin2015 ER - TY - JOUR AU - Uematsu, K. AU - Suzuki, N. AU - Iwamae, T. AU - Inui, M. AU - Yukawa, H. PY - 2012 DA - 2012// TI - Increased fructose 1,6-bisphosphate aldolase in plastids enhances growth and photosynthesis of tobacco plants JO - J Exp Bot VL - 63 UR - https://doi.org/10.1093/jxb/ers004 DO - 10.1093/jxb/ers004 ID - Uematsu2012 ER - TY - JOUR AU - Li, T. AU - Liu, L. N. AU - Jiang, C. D. AU - Liu, Y. J. AU - Shi, L. PY - 2014 DA - 2014// TI - Effects of mutual shading on the regulation of photosynthesis in field-grown sorghum JO - J Photochem Photobiol B VL - 137 UR - https://doi.org/10.1016/j.jphotobiol.2014.04.022 DO - 10.1016/j.jphotobiol.2014.04.022 ID - Li2014 ER - TY - JOUR AU - Blodner, C. AU - Majcherczyk, A. AU - Kues, U. AU - Polle, A. PY - 2007 DA - 2007// TI - Early drought-induced changes to the needle proteome of Norway spruce JO - Tree Physiol VL - 27 UR - https://doi.org/10.1093/treephys/27.10.1423 DO - 10.1093/treephys/27.10.1423 ID - Blodner2007 ER - TY - JOUR AU - Cheng, Z. W. AU - Dong, K. AU - Gei, P. AU - Bian, Y. W. AU - Dong, L. W. AU - Deng, X. PY - 2015 DA - 2015// TI - Identification of leaf proteins differentially accumulated between wheat cultivars distinct in their levels of drought tolerance JO - PLoS One VL - 10 UR - https://doi.org/10.1371/journal.pone.0125302 DO - 10.1371/journal.pone.0125302 ID - Cheng2015 ER - TY - JOUR AU - Ogawa, K. AU - Kanematsu, S. AU - Asada, K. PY - 1996 DA - 1996// TI - Intra- and extra-cellular localization of “cytosolic” CuZn-superoxide dismutase in spinach leaf and hypocotyl JO - Plant Cell Physiol VL - 37 UR - https://doi.org/10.1093/oxfordjournals.pcp.a029014 DO - 10.1093/oxfordjournals.pcp.a029014 ID - Ogawa1996 ER - TY - JOUR AU - Marikovsky, M. AU - Ziv, V. AU - Nevo, N. AU - Harris-Cerruti, C. AU - Mahler, O. PY - 2003 DA - 2003// TI - Cu/Zn superoxide dismutase plays important role in immune response JO - J Immunol VL - 170 UR - https://doi.org/10.4049/jimmunol.170.6.2993 DO - 10.4049/jimmunol.170.6.2993 ID - Marikovsky2003 ER - TY - JOUR AU - Kiel, J. A. K. W. AU - Emmrich, K. AU - Meyer, H. E. AU - Kunau, W. H. PY - 2005 DA - 2005// TI - Ubiquitination of the peroxisomal targeting signal type 1 receptor, pex5p, suggests the presence of a quality control mechanism during peroxisomal matrix protein import JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M403632200 DO - 10.1074/jbc.M403632200 ID - Kiel2005 ER - TY - JOUR AU - Charton, L. AU - Plett, A. AU - Linka, N. PY - 2019 DA - 2019// TI - Plant peroxisomal solute transporter proteins JO - J Integr Plant Biol VL - 61 ID - Charton2019 ER - TY - JOUR AU - Han, Y. S. AU - Yang, H. AU - Wu, M. Y. AU - Yi, H. L. PY - 2019 DA - 2019// TI - Enhanced drought tolerance of foxtail millet seedlings by sulfur dioxide fumigation JO - Ecotox Environ Safe VL - 178 UR - https://doi.org/10.1016/j.ecoenv.2019.04.006 DO - 10.1016/j.ecoenv.2019.04.006 ID - Han2019 ER - TY - JOUR AU - Wu, J. J. AU - Yan, G. B. AU - Duan, Z. Q. AU - Wang, Z. J. AU - Kang, C. Y. AU - Guo, L. PY - 2020 DA - 2020// TI - Roles of the Brassica napus DELLA protein BnaA6.RGA, in modulating drought tolerance by interacting with the ABA signaling component BnaA10.ABF2. Front JO - Plant Sci VL - 11 ID - Wu2020 ER - TY - JOUR AU - Li, X. Y. AU - Liu, X. AU - Yao, Y. AU - Li, Y. H. AU - Liu, S. AU - He, C. Y. PY - 2013 DA - 2013// TI - Overexpression of Arachis hypogaea AREB1 gene enhances drought tolerance by modulating ROS scavenging and maintaining endogenous ABA content JO - Int J Mol Sci VL - 14 UR - https://doi.org/10.3390/ijms140612827 DO - 10.3390/ijms140612827 ID - Li2013 ER - TY - JOUR AU - Wei, C. AU - Yao, Q. M. AU - Li, S. AU - Agarwal, G. AU - Wang, B. AU - Li, L. PY - 2016 DA - 2016// TI - Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq JO - Front Plant Sci VL - 7 ID - Wei2016 ER - TY - JOUR AU - Jin, J. P. AU - Zhang, H. AU - Kong, L. AU - Gao, G. AU - Luo, J. C. PY - 2014 DA - 2014// TI - PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1016 DO - 10.1093/nar/gkt1016 ID - Jin2014 ER - TY - JOUR AU - Gonçalves, L. P. AU - Boscariol Camargo, R. L. AU - Takita, M. A. AU - Machado, M. A. AU - Soares Filho, W. S. AU - Costa, M. G. C. PY - 2019 DA - 2019// TI - Rootstock-induced molecular responses associated with drought tolerance in sweet orange as revealed by RNA-Seq JO - BMC Genomics VL - 20 UR - https://doi.org/10.1186/s12864-019-5481-z DO - 10.1186/s12864-019-5481-z ID - Gonçalves2019 ER - TY - JOUR AU - Lorenzo, C. P. AU - Anahit, G. AU - Irma, R. V. AU - Martinez-Garcia, J. F. AU - Bilbao-Castro, J. R. AU - Robertson, D. L. PY - 2010 DA - 2010// TI - Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae JO - Plant Physiol VL - 153 UR - https://doi.org/10.1104/pp.110.153593 DO - 10.1104/pp.110.153593 ID - Lorenzo2010 ER - TY - JOUR AU - Wei, K. F. AU - Chen, H. Q. PY - 2018 DA - 2018// TI - Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat JO - BMC Plant Biol VL - 18 UR - https://doi.org/10.1186/s12870-018-1529-5 DO - 10.1186/s12870-018-1529-5 ID - Wei2018 ER - TY - JOUR AU - Bailey, P. C. AU - Martin, C. AU - Toledo-Ortiz, G. AU - Quail, P. AU - Huq, E. AU - Heim, M. PY - 2003 DA - 2003// TI - Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana JO - Plant Cell VL - 15 UR - https://doi.org/10.1105/tpc.151140 DO - 10.1105/tpc.151140 ID - Bailey2003 ER - TY - JOUR AU - Song, X. M. AU - Huang, Z. N. AU - Duan, W. K. AU - Ren, J. AU - Liu, T. K. AU - Li, Y. PY - 2014 DA - 2014// TI - Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp.pekinensis) mol JO - Genet Genomics VL - 289 UR - https://doi.org/10.1007/s00438-013-0791-3 DO - 10.1007/s00438-013-0791-3 ID - Song2014 ER - TY - JOUR AU - Niu, X. AU - Guan, Y. X. AU - Chen, S. K. AU - Li, H. F. PY - 2017 DA - 2017// TI - Genome-wide analysis of basic helix-loop-helix (bHLH) transcription factors in Brachypodium distachyon JO - BMC Genomics VL - 18 UR - https://doi.org/10.1186/s12864-017-4044-4 DO - 10.1186/s12864-017-4044-4 ID - Niu2017 ER - TY - JOUR AU - Mao, K. AU - Dong, Q. L. AU - Li, C. AU - Liu, C. H. AU - Ma, F. W. PY - 2017 DA - 2017// TI - Genome wide identification and characterization of apple bHLH transcription factors and expression analysis in response to drought and salt stress JO - Front Plant Sci VL - 8 UR - https://doi.org/10.3389/fpls.2017.00480 DO - 10.3389/fpls.2017.00480 ID - Mao2017 ER - TY - JOUR AU - Cui, X. AU - Wang, Y. X. AU - Liu, Z. W. AU - Wang, W. L. AU - Li, H. AU - Zhuang, J. PY - 2018 DA - 2018// TI - Transcriptome-wide identification and expression profile analysis of the bHLH family genes in Camellia sinensis JO - Funct Integr Genomics VL - 18 UR - https://doi.org/10.1007/s10142-018-0608-x DO - 10.1007/s10142-018-0608-x ID - Cui2018 ER - TY - JOUR AU - Seo, J. S. AU - Joo, J. AU - Kim, M. J. AU - Kim, Y. K. AU - Nahm, B. H. AU - Song, S. I. PY - 2011 DA - 2011// TI - OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice JO - Plant J VL - 65 UR - https://doi.org/10.1111/j.1365-313X.2010.04477.x DO - 10.1111/j.1365-313X.2010.04477.x ID - Seo2011 ER - TY - JOUR AU - Zhai, Y. Q. AU - Zhang, L. C. AU - Xia, C. AU - Fu, S. L. AU - Zhao, G. Y. AU - Jia, J. Z. PY - 2016 DA - 2016// TI - The wheat transcription factor, TabHLH39, improves tolerance to multiple abiotic stressors in transgenic plants JO - Biochem Biophys Res Commun VL - 473 UR - https://doi.org/10.1016/j.bbrc.2016.04.071 DO - 10.1016/j.bbrc.2016.04.071 ID - Zhai2016 ER - TY - JOUR AU - Wang, C. L. AU - Chen, S. AU - Dong, Y. P. AU - Ren, R. J. AU - Chen, D. F. AU - Chen, X. W. PY - 2020 DA - 2020// TI - Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice JO - New Phytol VL - 226 UR - https://doi.org/10.1111/nph.16416 DO - 10.1111/nph.16416 ID - Wang2020 ER - TY - JOUR AU - Wang, Z. AU - Wang, F. X. AU - Hong, Y. C. AU - Yao, J. J. AU - Ren, Z. Z. AU - Shi, H. Z. PY - 2018 DA - 2018// TI - The flowering repressor SVP confers drought resistance in Arabidopsis by regulating abscisic acid catabolism JO - Mol Plant VL - 11 UR - https://doi.org/10.1016/j.molp.2018.06.009 DO - 10.1016/j.molp.2018.06.009 ID - Wang2018 ER - TY - JOUR AU - Jiang, A. L. AU - Tian, S. P. AU - Xu, Y. Z. PY - 2002 DA - 2002// TI - Effects of controlled atmospheres with high_O_2 or high_CO_2 concentrations on postharvest physiology and storability of "Napoleon" sweet cherry JO - J Integr Plant Biol VL - 44 ID - Jiang2002 ER - TY - JOUR AU - Yingsanga, P. AU - Srilaong, V. AU - Kanlayanarat, S. AU - Noichinda, S. AU - McGlasson, W. B. PY - 2008 DA - 2008// TI - Relationship between browning and related enzymes (PAL, PPO and POD) in rambutan fruit (Nephelium lappaceum Linn.) cvs. Rongrien and see-Chompoo JO - Postharvest Biol Technol VL - 50 UR - https://doi.org/10.1016/j.postharvbio.2008.05.004 DO - 10.1016/j.postharvbio.2008.05.004 ID - Yingsanga2008 ER - TY - JOUR AU - Langmead, B. AU - Salzberg, S. L. PY - 2012 DA - 2012// TI - Fast gapped-read alignment with bowtie 2 JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.1923 DO - 10.1038/nmeth.1923 ID - Langmead2012 ER - TY - JOUR AU - Grabherr, M. G. AU - Haas, B. J. AU - Yassour, M. AU - Levin, J. Z. AU - Thompson, D. A. AU - Amit, I. PY - 2011 DA - 2011// TI - Full-length transcriptome assembly from RNA-seq data without a reference genome JO - Nat Biotech VL - 29 UR - https://doi.org/10.1038/nbt.1883 DO - 10.1038/nbt.1883 ID - Grabherr2011 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schäffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Li, B. AU - Dewey, C. N. PY - 2011 DA - 2011// TI - RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome JO - BMC Bioinform VL - 12 UR - https://doi.org/10.1186/1471-2105-12-323 DO - 10.1186/1471-2105-12-323 ID - Li2011 ER - TY - JOUR AU - Haas, B. J. AU - Papanicolaou, A. AU - Yassour, M. AU - Grabherr, M. AU - Blood, P. D. AU - Bowden, J. PY - 2013 DA - 2013// TI - De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with trinity JO - Nat Protoc VL - 8 UR - https://doi.org/10.1038/nprot.2013.084 DO - 10.1038/nprot.2013.084 ID - Haas2013 ER - TY - JOUR AU - Trapnell, C. AU - Williams, B. A. AU - Pertea, G. AU - Mortazavi, A. AU - Kwan, G. AU - Marijke, J. PY - 2010 DA - 2010// TI - Van Baren, et al. transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation JO - Nat Biotech VL - 28 UR - https://doi.org/10.1038/nbt.1621 DO - 10.1038/nbt.1621 ID - Trapnell2010 ER - TY - JOUR AU - Smyth, G. K. AU - Robinson, M. D. AU - McCarthy, D. J. PY - 2010 DA - 2010// TI - edgeR: a bioconductor package for differential expression analysis of digital gene expression data JO - Bioinform VL - 26 UR - https://doi.org/10.1093/bioinformatics/btp616 DO - 10.1093/bioinformatics/btp616 ID - Smyth2010 ER - TY - JOUR AU - Young, M. D. AU - Wakefield, M. J. AU - Smyth, G. K. AU - Oshlack, A. PY - 2010 DA - 2010// TI - Gene ontology analysis for RNA-seq: accounting for selection bias JO - Genome Biol VL - 11 UR - https://doi.org/10.1186/gb-2010-11-2-r14 DO - 10.1186/gb-2010-11-2-r14 ID - Young2010 ER - TY - JOUR AU - Mao, X. Z. AU - Cai, T. AU - Olyarchuk, J. G. AU - Wei, L. P. PY - 2005 DA - 2005// TI - Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary JO - Bioinformatics. VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti430 DO - 10.1093/bioinformatics/bti430 ID - Mao2005 ER - TY - JOUR AU - Langfelder, P. AU - Horvath, S. PY - 2008 DA - 2008// TI - WGCNA: an R package for weighted correlation network analysis JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-559 DO - 10.1186/1471-2105-9-559 ID - Langfelder2008 ER -