Table 1 The taxonomic composition of the chloroplast genome sequences which used for design probes
From: Targeted enrichment of novel chloroplast-based probes reveals a large-scale phylogeny of 412 bamboos
NCBI species ID | Classification | Order | Family | Genus | Species |
|---|---|---|---|---|---|
NC_010093.1 | Monocots | Acorales | Acoraceae | Acorus | Acorus americanus |
NC_022133.1 | Monocots | Poales | Poaceae | Aegilops | Aegilops tauschii |
NC_023934.1 | Monocots | Poales | Poaceae | Arundinaria | Arundinaria appalachiana |
NC_012927.1 | Monocots | Poales | Poaceae | Bambusa | Bambusa oldhamii |
NC_011032.1 | Monocots | Poales | Poaceae | Brachypodium | Brachypodium distachyon |
NC_025663.1 | Monocots | Asparagales | Orchidaceae | Corallorhiza | Corallorhiza wisteriana |
NC_021432.1 | Monocots | Asparagales | Orchidaceae | Cymbidium | Cymbidium tracyanum |
NC_025232.1 | Monocots | Poales | Poaceae | Danthonia | Danthonia californica |
NC_009601.1 | Monocots | Dioscoreales | Dioscoreaceae | Dioscorea | Dioscorea elephantipes |
NC_024715.1 | Monocots | Poales | Poaceae | Fargesia | Fargesia nitida |
NC_019648.1 | Monocots | Poales | Poaceae | Festuca | Festuca altissima |
NC_024728.1 | Monocots | Liliales | Liliaceae | Fritillaria | Fritillaria cirrhosa |
NC_024720.1 | Monocots | Poales | Poaceae | Indocalamus | Indocalamus wilsonii |
NC_022926.1 | Monocots | Zingiberales | Musaceae | Musa | Musa textilis |
NC_001320.1 | Monocots | Poales | Poaceae | Oryza | Oryza sativa Japonica |
NC_017609.1 | Monocots | Asparagales | Orchidaceae | Phalaenopsis | Phalaenopsis equestris |
NC_023245.1 | Monocots | Poales | Poaceae | Pharus | Pharus lappulaceus |
NC_013991.2 | Monocots | Arecales | Arecaceae | Phoenix | Phoenix dactylifera |
NC_015817.1 | Monocots | Poales | Poaceae | Phyllostachys | Phyllostachys edulis |
NC_022850.1 | Monocots | Poales | Poaceae | Setaria | Setaria italica |
NC_008602.1 | Monocots | Poales | Poaceae | Sorghum | Sorghum bicolor |
NC_002762.1 | Monocots | Poales | Poaceae | Triticum | Triticum aestivum |
NC_015894.1 | Monocots | Alismatales | Araceae | Wolffiella | Wolffiella lingulata |
NC_024725.1 | Monocots | Poales | Poaceae | Yushania | Yushania levigata |
NC_001666.2 | Monocots | Poales | Poaceae | Zea | Zea mays |
NC_005086.1 | Basal angiosperms | Amborellales | Amborellaceae | Amborella | Amborella trichopoda |
NC_006050.1 | Basal angiosperms | Nymphaeales | Nymphaeaceae | Nymphaea | Nymphaea alba |
NC_023242.1 | Magnoliidae | Magnoliales | Magnoliaceae | Magnolia | Magnolia sprengeri |
NC_008457.1 | Magnoliidae | Piperales | Piperaceae | Piper | Piper cenocladum |
NC_026690.1 | Eudicots | Ericales | Actinidiaceae | Actinidia | Actinidia chinensis |
NC_009265.1 | Eudicots | Brassicales | Brassicaceae | Aethionema | Aethionema cordifolium |
NC_015621.1 | Eudicots | Asterales | Asteraceae | Ageratina | Ageratina adenophora |
NC_022412.1 | Eudicots | Myrtales | Myrtaceae | Angophora | Angophora costata |
NC_000932.1 | Eudicots | Brassicales | Brassicaceae | Arabidopsis | Arabidopsis thaliana |
NC_009268.1 | Eudicots | Brassicales | Brassicaceae | Arabis | Arabis hirsuta |
NC_022810.1 | Eudicots | Apiales | Araliaceae | Aralia | Aralia undulata |
NC_021121.1 | Eudicots | Ericales | Primulaceae | Ardisia | Ardisia polysticta |
NC_025910.1 | Eudicots | Asterales | Asteraceae | Artemisia | Artemisia montana |
NC_022432.1 | Eudicots | Gentianales | Asclepiadaceae | Asclepias | Asclepias syriaca |
NC_016734.1 | Eudicots | Brassicales | Brassicaceae | Brassica | Brassica napus |
NC_024541.1 | Eudicots | Ericales | Theaceae | Camellia | Camellia crapnelliana |
NC_010323.1 | Eudicots | Brassicales | Caricaceae | Carica | Carica papaya |
NC_014674.1 | Eudicots | Fagales | Fagaceae | Castanea | Castanea mollissima |
NC_011163.1 | Eudicots | Fagales | Fagaceae | Cicer | Cicer arietinum |
NC_025642.1 | Eudicots | Lamiales | Orobanchaceae | Cistanche | Cistanche phelypaea |
NC_008334.1 | Eudicots | Sapindales | Rutaceae | Citrus | Citrus sinensis |
NC_008535.1 | Eudicots | Gentianales | Rubiaceae | Coffea | Coffea arabica |
NC_022409.1 | Eudicots | Myrtales | Myrtaceae | Corymbia | Corymbia eximia |
NC_007144.1 | Eudicots | Cucurbitales | Cucurbitaceae | Cucumis | Cucumis sativus |
NC_009963.1 | Eudicots | Solanales | Convolvulaceae | Cuscuta | Cuscuta exaltata |
NC_014569.1 | Eudicots | Geraniales | Geraniaceae | Erodium | Erodium texanum |
NC_022396.1 | Eudicots | Myrtales | Myrtaceae | Eucalyptus | Eucalyptus aromaphloia |
NC_015206.1 | Eudicots | Rosales | Rosaceae | Fragaria | Fragaria vesca |
NC_007942.1 | Eudicots | Fabales | Fabaceae | Glycine | Glycine max |
NC_016668.1 | Eudicots | Malvales | Malvaceae | Gossypium | Gossypium raimondii |
NC_024732.1 | Eudicots | Asterales | Campanulaceae | Hanabusaya | Hanabusaya asiatica |
NC_023110.1 | Eudicots | Asterales | Asteraceae | Helianthus | Helianthus decapetalus |
NC_026726.1 | Eudicots | Solanales | Solanaceae | Iochroma | Iochroma loxense |
NC_009808.1 | Eudicots | Solanales | Convolvulaceae | Ipomoea | Ipomoea purpurea |
NC_026677.1 | Eudicots | Fabales | Fabaceae | Libidibia | Libidibia coriaria |
NC_024064.1 | Eudicots | Malpighiales | Chrysobalanaceae | Licania | Licania alba |
NC_002694.1 | Eudicots | Fabales | Fabaceae | Lotus | Lotus japonicus |
NC_023090.1 | Eudicots | Fabales | Fabaceae | Lupinus | Lupinus luteus |
NC_010433.1 | Eudicots | Malpighiales | Euphorbiaceae | Manihot | Manihot esculenta |
NC_003119.6 | Eudicots | Fabales | Fabaceae | Medicago | Medicago truncatula |
NC_012615.1 | Eudicots | Ranunculales | Ranunculaceae | Megaleranthis | Megaleranthis saniculifolia |
NC_008359.1 | Eudicots | Rosales | Moraceae | Morus | Morus indica |
NC_025339.1 | Eudicots | Proteales | Nelumbonaceae | Nelumbo | Nelumbo nucifera |
NC_010358.1 | Eudicots | Myrtales | Onagraceae | Oenothera | Oenothera argillicola |
NC_013707.2 | Eudicots | Lamiales | Oleaceae | Olea | Olea europaea |
NC_006290.1 | Eudicots | Apiales | Araliaceae | Panax | Panax ginseng |
NC_009259.1 | Eudicots | Fabales | Fabaceae | Phaseolus | Phaseolus vulgaris |
NC_009143.1 | Eudicots | Malpighiales | Salicaceae | Populus | Populus trichocarpa |
NC_014697.1 | Eudicots | Rosales | Rosaceae | Prunus | Prunus persica |
NC_015996.1 | Eudicots | Rosales | Rosaceae | Pyrus | Pyrus pyrifolia |
NC_016736.1 | Eudicots | Malpighiales | Euphorbiaceae | Ricinus | Ricinus communis |
NC_026722.1 | Eudicots | Malpighiales | Salicaceae | Salix | Salix purpurea |
NC_026202.1 | Eudicots | Lamiales | Scrophulariaceae | Scrophularia | Scrophularia takesimensis |
NC_023085.1 | Eudicots | Saxifragales | Crassulaceae | Sedum | Sedum sarmentosum |
NC_016730.1 | Eudicots | Caryophyllales | Caryophyllaceae | Silene | Silene latifolia |
NC_008096.2 | Eudicots | Solanales | Solanaceae | Solanum | Solanum tuberosum |
NC_014676.2 | Eudicots | Malvales | Malvaceae | Theobroma | Theobroma cacao |
NC_024034.1 | Eudicots | Fabales | Fabaceae | Trifolium | Trifolium grandiflorum |
NC_021449.1 | Eudicots | Lamiales | Lentibulariaceae | Utricularia | Utricularia gibba |
NC_021091.1 | Eudicots | Fabales | Fabaceae | Vigna | Vigna angularis |
NC_007957.1 | Eudicots | Vitales | Vitaceae | Vitis | Vitis vinifera |
NC_023259.1 | Eudicots | Geraniales | Vivianiaceae | Viviania | Viviania marifolia |
NC_013086.1 | Lycopodiophyta | Selaginellales | Selaginellaceae | Selaginella | Selaginella moellendorffii |
NC_008829.1 | Moiliformopses | Marattiales | Marattiaceae | Angiopteris | Angiopteris evecta |
NC_014699.1 | Moiliformopses | Equisetales | Equisetaceae | Equisetum | Equisetum arvense |
NC_014348.1 | Moiliformopses | Dennstaedtiales | Dennstaedtiaceae | Pteridium | Pteridium aquilinum |
NC_016063.1 | Gymnosperms | Pinales | Cephalotaxaceae | Cephalotaxus | Cephalotaxus wilsoniana |
NC_009618.1 | Gymnosperms | Cycadales | Cycadaceae | Cycas | Cycas taitungensis |
NC_026301.1 | Gymnosperms | Gnetales | Gnetaceae | Gnetum | Gnetum gnemon |
NC_024022.1 | Gymnosperms | Pinales | Cupressaceae | Juniperus | Juniperus monosperma |
NC_021456.1 | Gymnosperms | Pinales | Pinaceae | Picea | Picea abies |
NC_011153.4 | Gymnosperms | Pinales | Pinaceae | Pinus | Pinus contorta |
NC_023805.1 | Gymnosperms | Pinales | Podocarpaceae | Podocarpus | Podocarpus lambertii |
NC_016065.1 | Gymnosperms | Pinales | Cupressaceae | Taiwania | Taiwania cryptomerioides |